View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18480_high_5 (Length: 439)
Name: NF18480_high_5
Description: NF18480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18480_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 37487944 - 37488355
Alignment:
| Q |
12 |
caaagggaatcacgagaacttataactctagcagaaaaccgatcagactcactaaaccttgactttcttccctccttatgcaccttacccttttccttat |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37487944 |
caaagggaatcacgagaactgataactctagcagaaaaccgatcagactcactaaaccttgactttcttccctccttatgcaccttacccttttccttat |
37488043 |
T |
|
| Q |
112 |
acacctccattccaaccttatccttcacctctctcaccgaatcccacaacccctgttgtgactccaaaatcatcaccaccctctctttacactcttccaa |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37488044 |
acacctccataccaaccttatccttcacctctctcaccgaatcccataacccctgttgtgactccaaaatcatcaccaccctctccttacactcttccaa |
37488143 |
T |
|
| Q |
212 |
cctcttcaaacaacaaaccaattcaacagcttctccaaattccatacaccctaatctctccttaaactcattcacttcaacaatcaccacagtttctatc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37488144 |
cctcttcaaacaacaaaccaattcaacagcttctccaaattccaaacaccctaatctctccttaaactcattcacttcaacaatcaccacagtttctatc |
37488243 |
T |
|
| Q |
312 |
accacccaatcttcacaaaccaaattcactatctcacccaccaacttgttcatgttcacttgatctggtctcttacaaatcccctcaaccagtgtcacca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37488244 |
accacccaatcttcacaaaccaaattcactatctcacccaccaacttgttcatgttcacttgatctggtctcttacaaatcccctcaaccagtgtcacca |
37488343 |
T |
|
| Q |
412 |
aagagtcaaact |
423 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37488344 |
aagagtcaaact |
37488355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University