View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18480_high_8 (Length: 240)
Name: NF18480_high_8
Description: NF18480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18480_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 693952 - 693745
Alignment:
| Q |
19 |
agaaaagagctgagatgggtaagaaaagagccaaaaacagagcaaaatcatacacactcccttcatcaccatcacatgactcattctcatcatcttcttc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
693952 |
agaaaagagctgagatggggaagaaaagaaccaaaaacagagcaaaatcatacacactcccttcatcaccatcacatgactcattctcatcatcttcttc |
693853 |
T |
|
| Q |
119 |
ctcagattttgagttcacaatctccatttcacctcgcaaatcctccaacacactctgtcctgctgatgaactcttctacaaaggccaactcttacctctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
693852 |
ctcagattttgagttcacaatctccatttcacctcgcaaatcctccaacacactctgtcctgcagatgaactcttctacaaaggccaactcttacctctt |
693753 |
T |
|
| Q |
219 |
catctctc |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
693752 |
catctctc |
693745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University