View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18480_low_2 (Length: 720)
Name: NF18480_low_2
Description: NF18480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18480_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 226 - 710
Target Start/End: Complemental strand, 27174523 - 27174040
Alignment:
| Q |
226 |
atgtactcaattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaatagtaatatggaaatgacgtatt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27174523 |
atgtactcaattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaatagtaatatggaaatgacgtatt |
27174424 |
T |
|
| Q |
326 |
agaaa-caaaaatatgttgataacatcaagctcactcttacaaacacttcactgctatataaatagagctcaaacataactgaaaacaaaaaggaactca |
424 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
27174423 |
agaaaacaaaaatattttgataacatcaagctcactcttacaaacacttcactgctatataaatagagctcaaacataactgaaaacaaaaagaaaccca |
27174324 |
T |
|
| Q |
425 |
ctaatgagtaattttattgatatctgacataagtacaagatacatttttcttaatagtgcattaaaacatagaaacagagttaccctggtaaataatgca |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
27174323 |
ctaatgagtaattttattgatatctgacataagtacaagatacatttttcttaatagtgcattaaaaca--gaaacagagttaccctggtatataatgca |
27174226 |
T |
|
| Q |
525 |
ccagaaaaagtctgatacatgtcccaaccaaattcttgaacctacaagttttgttacagcaaccaacctatggacctcaatattattgtcttcaaataaa |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27174225 |
ccagaaaaagtctgatacatgtcccaaccaaattcttgaacctacaagttttgttacagcaaccaacctatggacctcaatattattgtcttcaaataaa |
27174126 |
T |
|
| Q |
625 |
cgcgtaacagaaaatctaaatgtactcgtcagctcggtcaacaagatattataggttctatagctgcattggacctcttgcctatg |
710 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |
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| T |
27174125 |
agcgtaacagaaaatctaaatgtactcatcagctcggtcaacaagagattataggttctatagctgcactggacctcatgcctatg |
27174040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 226 - 710
Target Start/End: Complemental strand, 27231328 - 27230845
Alignment:
| Q |
226 |
atgtactcaattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaatagtaatatggaaatgacgtatt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27231328 |
atgtactcaattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaatagtaatatggaaatgacgtatt |
27231229 |
T |
|
| Q |
326 |
agaaa-caaaaatatgttgataacatcaagctcactcttacaaacacttcactgctatataaatagagctcaaacataactgaaaacaaaaaggaactca |
424 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
27231228 |
agaaaacaaaaatattttgataacatcaagctcactcttacaaacacttcactgctatataaatagagctcaaacataactgaaaacaaaaagaaaccca |
27231129 |
T |
|
| Q |
425 |
ctaatgagtaattttattgatatctgacataagtacaagatacatttttcttaatagtgcattaaaacatagaaacagagttaccctggtaaataatgca |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
27231128 |
ctaatgagtaattttattgatatctgacataagtacaagatacatttttcttaatagtgcattaaaaca--gaaacagagttaccctggtatataatgca |
27231031 |
T |
|
| Q |
525 |
ccagaaaaagtctgatacatgtcccaaccaaattcttgaacctacaagttttgttacagcaaccaacctatggacctcaatattattgtcttcaaataaa |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27231030 |
ccagaaaaagtctgatacatgtcccaaccaaattcttgaacctacaagttttgttacagcaaccaacctatggacctcaatattattgtcttcaaataaa |
27230931 |
T |
|
| Q |
625 |
cgcgtaacagaaaatctaaatgtactcgtcagctcggtcaacaagatattataggttctatagctgcattggacctcttgcctatg |
710 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
27230930 |
agcgtaacagaaaatctaaatgtactcatcagctcggtcaacaagagattataggttctatagctgcactggacctcatgcctatg |
27230845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 27174731 - 27174559
Alignment:
| Q |
18 |
agacatgattcaactttggcttgccttgtcttcttttctttgtgaatcttcatttgagccgctattggattttccggcaatgactccacttcatattctt |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27174731 |
agacatgattcaactttggcctgccttgtcttcttttctttatgaatcttcatttgagccgccattggattttccggcaatgactccacttcatattctt |
27174632 |
T |
|
| Q |
118 |
cttccacaacttcccaaaggtctaaggcttcaagatacgttttcatcacaaaaatgggtggagaaggcagaag |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
27174631 |
cttccacaacttcccaaaggtctaaggcttcaagatatgttttcatcacaaaaatgggtggagaagggagaag |
27174559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 27231536 - 27231364
Alignment:
| Q |
18 |
agacatgattcaactttggcttgccttgtcttcttttctttgtgaatcttcatttgagccgctattggattttccggcaatgactccacttcatattctt |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
27231536 |
agacatgattcaactttggcctgccttgtcttcttttctttatgaatcttcatttgagccgccattggattttccggcaatgactccacttcatattctt |
27231437 |
T |
|
| Q |
118 |
cttccacaacttcccaaaggtctaaggcttcaagatacgttttcatcacaaaaatgggtggagaaggcagaag |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27231436 |
cttccacaacttcccaaaggtctaaggcttcaagatatgttttcatcacaaaaatgggtggagaagggagaag |
27231364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 234 - 428
Target Start/End: Original strand, 31233435 - 31233630
Alignment:
| Q |
234 |
aattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaatagtaatatggaaatgacgtattagaa-aca |
332 |
Q |
| |
|
|||||||| |||||||||||| |||| ||| | || ||||||||||||||| ||| ||||||||||||| | |||| |||||| |||| | | ||| |
|
|
| T |
31233435 |
aattcacagatcccttaagaaaataagctctgctatcaatttgttggttttaaagggatatgagagaaaaaaatttatgaaaatgatatatttgtagaca |
31233534 |
T |
|
| Q |
333 |
aaaatatgttgataacatcaagctcactcttacaaacacttcactgctatataaatagagctcaaacataactgaaaacaaaaaggaactcactaa |
428 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||||||||| |||| ||||||||||||| |||||||||| ||||||||||| ||||| |||| |
|
|
| T |
31233535 |
aaaatatgtttataacatcaagcacaccattacaaacacttcagtgctttataaatagagctgaaacataacttaaaacaaaaagaaactccctaa |
31233630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 274 - 422
Target Start/End: Complemental strand, 13457934 - 13457784
Alignment:
| Q |
274 |
ttgttggttttgaa-gagatatgagagaaatagtaatatggaaatgacgtattagaa-acaaaaatatgttgataacatcaagctcactcttacaaacac |
371 |
Q |
| |
|
||||||||||| || | |||| |||||||| |||| ||||||||||| |||| ||| ||| ||||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
13457934 |
ttgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattggaagacagaaatatgtttataacatcaagcacaccattacaaacac |
13457835 |
T |
|
| Q |
372 |
ttcactgctatataaatagagctcaaacataactgaaaacaaaaaggaact |
422 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||| | ||||||||||| |||| |
|
|
| T |
13457834 |
ttcagtgctctataaatagagctgaaacatatcgtaaaacaaaaagaaact |
13457784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 272 - 380
Target Start/End: Complemental strand, 33330758 - 33330651
Alignment:
| Q |
272 |
atttgttggttttgaagagatatgagagaaatagtaatatggaaatgacgtattagaa-acaaaaatatgttgataacatcaagctcactcttacaaaca |
370 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||| ||| ||| ||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
33330758 |
atttgttggttttaaag-gatatgagagaaa-agtaatatggaaatgacatatcggaagacagaaatatgtttataacatcaaactcatccttacaaaca |
33330661 |
T |
|
| Q |
371 |
cttcactgct |
380 |
Q |
| |
|
|||||||||| |
|
|
| T |
33330660 |
cttcactgct |
33330651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 422
Target Start/End: Original strand, 23233755 - 23233889
Alignment:
| Q |
290 |
gatatgagagaaatagtaatatggaaatgacgtattagaa-acaaaaatatgttgataacatcaagctcactcttaca-aacacttcactgctatataaa |
387 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||||| ||| ||||| ||| |||||||||| | ||| ||||| || |||| | ||| |||||| |
|
|
| T |
23233755 |
gatatgagagaaaaagtattatggaaatgatatattagaagacagaaataagtttataacatcaaacacaccattacacaatactttagtgccctataaa |
23233854 |
T |
|
| Q |
388 |
tagagctcaaacataactgaaaacaaaaaggaact |
422 |
Q |
| |
|
||||||| |||||||| | ||||||||||| |||| |
|
|
| T |
23233855 |
tagagctgaaacataatttaaaacaaaaagaaact |
23233889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 428
Target Start/End: Complemental strand, 24454026 - 24453872
Alignment:
| Q |
275 |
tgttggttttgaagagatatgagagaaatagtaatatggaaatgacgtattagaa-acaaaaatatgttgataacatcaagctcactcttacaaacactt |
373 |
Q |
| |
|
|||||||||| || |||| |||||||| |||| |||||||||| |||| || ||| ||||||||| |||||||||| | || ||||||| | || |
|
|
| T |
24454026 |
tgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacatcaaacataccattacaaatagtt |
24453927 |
T |
|
| Q |
374 |
cactgctatataaatagagctcaaacataactgaaaacaaaaaggaactcactaa |
428 |
Q |
| |
|
|| | || ||||||||||||| |||||||||| ||||||||||| ||||| |||| |
|
|
| T |
24453926 |
cagtactctataaatagagctaaaacataacttaaaacaaaaagaaactccctaa |
24453872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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