View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18480_low_3 (Length: 691)
Name: NF18480_low_3
Description: NF18480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18480_low_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 648; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 1 - 676
Target Start/End: Original strand, 1807440 - 1808115
Alignment:
| Q |
1 |
agccggaatcttgaccggtggcgtgctcttcgttcttggtatcacaggattgatgcagctggtttacaagttagttcctttatctgttgtgaggggaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1807440 |
agccggaatcttgaccggtggcgtgctcttcgttcttggtatcacaggattgatgcagctggtgtacaagttagttcctttatctgttgtgaggggaatt |
1807539 |
T |
|
| Q |
101 |
caactagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1807540 |
caactagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggt |
1807639 |
T |
|
| Q |
201 |
ttgggttagatggtttggttctagccattatttgtgcttgttttattgtgattgtgaatggagctggccagaaaaatagcggttgttgcggtgctcccga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1807640 |
ttgggttagatggtttggttctagccattgtttgtgcttgttttattgtgattgtgaatggagctggccagaaaaatagcggttgttgcggtgctcccga |
1807739 |
T |
|
| Q |
301 |
tgatggtaatttggatggccaaattcaaaggagtgatgaaggtggaagaaagactaagatgaataaactaagaaagattattttttcacttccttctgct |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1807740 |
agatggtaatctggatggccaaattcaaagaagtgatgaaggtggaagaaagactaagatgaataaactaagaaagattattttttcacttccttctgct |
1807839 |
T |
|
| Q |
401 |
tttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagtcgtgcatgaaattaaatttggaccctctaaaatagaagtaatgaaat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1807840 |
tttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagttgtgcatgaaattaaatttggaccctctaaaatagaagtaatgaaat |
1807939 |
T |
|
| Q |
501 |
tcactaaacaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaactcagtgatagctgtttgtaaattatcaac |
600 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1807940 |
tcactaaagaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaactcagtgatagctgtttgtaaattatcaac |
1808039 |
T |
|
| Q |
601 |
agatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttggttct |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1808040 |
agatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttggttct |
1808115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 1875129 - 1875346
Alignment:
| Q |
50 |
ttgatgcagctggtttacaagttagttcctttatctgttgtgaggggaattcaactagcacaaggtttgtcatttgctttaacagctgttaaatatgtga |
149 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
1875129 |
ttgatgcagttggtgtacaagtttattcctttatctgttgtgaggggaattcaactagcacaaggtttatcatttgctttaactgctgttaaatatgtga |
1875228 |
T |
|
| Q |
150 |
gaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggtttgggttagatggtttggttctagccattatttgtgcttgttttattgt |
249 |
Q |
| |
|
| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||| |||||||| |||||| |||||| ||||| |
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|
| T |
1875229 |
ggaaaatgcaagatcttccaaagtctaaagctttaggtcaaagaccttggtttggattagatggattggttttagccattgtttgtgtttgtttcattgt |
1875328 |
T |
|
| Q |
250 |
gattgtgaatggagctgg |
267 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
1875329 |
aattgtgaatggtgctgg |
1875346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 373 - 674
Target Start/End: Original strand, 1875416 - 1875717
Alignment:
| Q |
373 |
aaagattattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagtcgtgcatgaaattaaattt |
472 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||| || || | |||||| || |||| ||| | | || |||||||||||||| ||| |
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|
| T |
1875416 |
aaagattcttttttcacttccttctgcttttgtaatctttgttttaggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagttt |
1875515 |
T |
|
| Q |
473 |
ggaccctctaaaatagaagtaatgaaattcactaaacaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaact |
572 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||||||| |||||||| ||| |||| ||||||| |
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|
| T |
1875516 |
ggaccctcttcaatagaagtggtgaaattcactaaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaact |
1875615 |
T |
|
| Q |
573 |
cagtgatagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttgg |
672 |
Q |
| |
|
| ||||||||||||||||| || |||| ||| | || ||||||| ||| |||||||| || ||| |||||||||||||||| | |||||||| ||||| |
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|
| T |
1875616 |
ctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttgg |
1875715 |
T |
|
| Q |
673 |
tt |
674 |
Q |
| |
|
|| |
|
|
| T |
1875716 |
tt |
1875717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 5 - 666
Target Start/End: Complemental strand, 25798768 - 25798107
Alignment:
| Q |
5 |
ggaatcttgaccggtggcgtgctcttcgttcttggtatcacaggattgatgcagctggtttacaagttagttcctttatctgttgtgaggggaattcaac |
104 |
Q |
| |
|
|||||||||||||| |||||| | ||| ||||||| ||||||||||||||| |||||| ||||||||| ||||| || ||||||| ||||| ||||||| |
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|
| T |
25798768 |
ggaatcttgaccggcggcgtgttgttcattcttggcatcacaggattgatgaagctgggttacaagtttattcctctacctgttgtaaggggcattcaac |
25798669 |
T |
|
| Q |
105 |
tagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtctaaatctttaggccaaagaccttggtttgg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| || |||| |||||||| || |
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|
| T |
25798668 |
tagcacaaggtttgtcatttgctttaactgctgttaaatatgtgaagaaagtgcaagatcttcccaagtctaaagctttgggtgaaaggccttggttagg |
25798569 |
T |
|
| Q |
205 |
gttagatggtttggttctagccattatttgtgcttgttttattgtgattgtgaatggagctggccagaaaaatagcggttgttgcggtgctcccga---t |
301 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||| |||||||||| ||||||| ||||||||||| | ||||| | || ||| ||| |||||| || | |
|
|
| T |
25798568 |
gttagatgggttggttctagctattgtttgtacttgttttatattgattgttaatggagctggtgaacaaaatcgtggatgtggcgttgctccagaaagt |
25798469 |
T |
|
| Q |
302 |
gatggtaatttggatggccaaattcaaaggagtgatgaaggtggaagaaagacta---agatgaataaactaagaaagattattttttcacttccttctg |
398 |
Q |
| |
|
| || |||||| ||||| ||| | |||||||||||||||||||| | || | || |||| | | |||||||||||||||||||||||||||| |
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|
| T |
25798468 |
ggtgataatttagatggaaaaaat------agtgatgaaggtggaagaaacaatagaaatatcaatagattgagaaagattattttttcacttccttctg |
25798375 |
T |
|
| Q |
399 |
cttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagtcgtgcatgaaattaaatttggaccctctaaaatagaagtaatgaa |
498 |
Q |
| |
|
| ||| |||||||||| ||||| || ||||||||||||||||||| | |||||| || ||||||||||||||||||| || ||||||| | |||| |
|
|
| T |
25798374 |
catttgtagtctttgtgttggggattgttttggtttttataagaaaacatgaagttgtcaatgaaattaaatttggaccaacttcaatagaattggtgaa |
25798275 |
T |
|
| Q |
499 |
attcactaaacaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaactcagtgatagctgtttgtaaattatca |
598 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||| |
|
|
| T |
25798274 |
attcactaaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccattgtcaattttgaactctgtcatagctgtttgtaagttatca |
25798175 |
T |
|
| Q |
599 |
acagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaattt |
666 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25798174 |
acagatctttttccagaaaaggaattttcagttacttcaatttcagtgacagttggactaatgaattt |
25798107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 373 - 597
Target Start/End: Complemental strand, 49993557 - 49993333
Alignment:
| Q |
373 |
aaagattattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagtcgtgcatgaaattaaattt |
472 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| ||||| ||||| | |||||| |||||||||||| | | || | ||||||||||||||| |
|
|
| T |
49993557 |
aaagattgttttttcactaccttctgcttttatagtatttgttttgggtgtgattttgggttttataagaaggcctaatgtgatacatgaaattaaattt |
49993458 |
T |
|
| Q |
473 |
ggaccctctaaaatagaagtaatgaaattcactaaacaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaact |
572 |
Q |
| |
|
||||| ||||| ||||| || ||||||| ||||||| ||||| |||||||||| || ||| | ||||||||||| || |||||||| ||||||| |
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|
| T |
49993457 |
ggaccttctaatatagagttagtgaaattttctaaacatgcatggaaacaaggttttataaagggtactattccacaactacccttgtcaattttgaact |
49993358 |
T |
|
| Q |
573 |
cagtgatagctgtttgtaaattatc |
597 |
Q |
| |
|
| |||||||||||||| ||| |||| |
|
|
| T |
49993357 |
cggtgatagctgtttgcaaactatc |
49993333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 49993838 - 49993732
Alignment:
| Q |
77 |
cctttatctgttgtgaggggaattcaactagcacaaggtttgtcatttgctttaacagctgttaaatatgtgagaaaagtgcaagatcttccaaagtcta |
176 |
Q |
| |
|
||||||| |||||| | || ||||| || |||||||||||||| ||||||||||| ||| |||||||||| |||||||| |||||| | |||||||||| |
|
|
| T |
49993838 |
cctttatgtgttgttcgagggattcagcttgcacaaggtttgtcttttgctttaactgctattaaatatgttagaaaagttcaagatttaccaaagtcta |
49993739 |
T |
|
| Q |
177 |
aatcttt |
183 |
Q |
| |
|
||||||| |
|
|
| T |
49993738 |
aatcttt |
49993732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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