View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18480_low_4 (Length: 562)
Name: NF18480_low_4
Description: NF18480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18480_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Complemental strand, 38928908 - 38928388
Alignment:
| Q |
18 |
aagaataatatcaacaatgaggtttgaggtattctttaccaatttggaagactaagctggcaaaacccttatccctaatgtcctatgtgatgttgatatc |
117 |
Q |
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| T |
38928908 |
aagaataatatcaacaatgaggtttgaggtattctttaccaatttggaagactaagctggcaaaacccttatccctaatgtcctatgtgatgttgatatc |
38928809 |
T |
|
| Q |
118 |
ttggaggaatcttgaatttccacttctagaaaaataattatctcaagctagttttgaattcccacttaatccaacttggttaggggtcccctcacctcag |
217 |
Q |
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| T |
38928808 |
ttggaggaatcttgaatttccacttctagaaaaataattatctcaagctagtttttaattcccacttaatccaacttggttaggggtcccctcacctcag |
38928709 |
T |
|
| Q |
218 |
ccacattaannnnnnngtaccaaatatatacaaataatgtcgaatttttaatgttgtgctagtcaaagttgactgaacatttttatttgcatgggacctt |
317 |
Q |
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| T |
38928708 |
ccacattaatttttt-gtaccaaatatatacaaataatgtcgaatttttaatgttgtgctagtcaaagttgactgaacatttttatttgcatgggacctt |
38928610 |
T |
|
| Q |
318 |
aatttcggcacattgaatagtaattaattttcttgatcaagtgatcactaccagctagaagagtaccaagatccctattttaaggccagaaagtatcatt |
417 |
Q |
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| T |
38928609 |
aatttcggcacattgaatagtaattaattttcttgatcaagtgatcactaccagctagaagagtaccaagatccctattttaaggccagaaagtatcatt |
38928510 |
T |
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| Q |
418 |
acaccatataaataagtaaatagagaatgaaaataagtttcaaaggcactttgtcaaggaattaaggaatatacaattcaacagtgtgctttaaaaatga |
517 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38928509 |
acaccatataaataagtaaatagagaatg--aataagtttcaaaggcactttgtcaaggaattaaggaatatacaattcaacagtgtgctttaaaaatga |
38928412 |
T |
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| Q |
518 |
tgctaatcatggttttaaaatcct |
541 |
Q |
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| T |
38928411 |
tgctaatcatggttttaaaatcct |
38928388 |
T |
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