View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18480_low_8 (Length: 274)
Name: NF18480_low_8
Description: NF18480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18480_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 50111339 - 50111077
Alignment:
| Q |
1 |
acacataacttaagaataatctatcactttagtccttaaactattaccatctctccaaattaagtccctaaactattttaaatccatcaaaaaattattc |
100 |
Q |
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| T |
50111339 |
acacataacttaagaataatctatcactttagtccttaaactattaccatctctccaaattaagtccctaaactattttaaatccatcaaaaaattattc |
50111240 |
T |
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| Q |
101 |
tgtcaaaagaagtgtttgaccaacatggctcacttattttatttgctatgtaataggattccaccaatgcagatggggttatcacaacctatctgttgta |
200 |
Q |
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| T |
50111239 |
tgtcaaaagaagtgtttgaccaacatg-ctcacttattttatttgctatgtaataggattccaccaatgcagatggggttatcacaacctatctgttgta |
50111141 |
T |
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| Q |
201 |
gaagatgttgttgaaaattacaataaagccaaaattccacttgatgttatatggaatgatgatg |
264 |
Q |
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| T |
50111140 |
gaagatgttgttgaaaattacaataaagccaaaattccactcgatgttatatggaatgatgatg |
50111077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 153 - 264
Target Start/End: Complemental strand, 50121211 - 50121100
Alignment:
| Q |
153 |
ataggattccaccaatgcagatggggttatcacaacctatctgttgtagaagatgttgttgaaaattacaataaagccaaaattccacttgatgttatat |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||| ||||||||||||||||| |||| |
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| T |
50121211 |
ataggattccaccaatgcagatggggttatcacaacctatctgttattgaagatgttgttgagaattacaagaaagctaaaattccacttgatgtgatat |
50121112 |
T |
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| Q |
253 |
ggaatgatgatg |
264 |
Q |
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| T |
50121111 |
ggaatgatgatg |
50121100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 23933616 - 23933717
Alignment:
| Q |
155 |
aggattccaccaatgcagatggggttatcacaacctatctgttgtagaagatgttgttgaaaattacaataaagccaaaattccacttgatgttatatgg |
254 |
Q |
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|||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| || | |||||| || || |||| ||||||||||| || ||| |
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| T |
23933616 |
aggattccaccaatgcagatggggatatcacaatctatcagttgttgaagatgttgtggatagttacaagaaggctcaaatcccacttgatgtgatctgg |
23933715 |
T |
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| Q |
255 |
aa |
256 |
Q |
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|| |
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| T |
23933716 |
aa |
23933717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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