View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_high_1 (Length: 912)
Name: NF18481_high_1
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 269 - 697
Target Start/End: Original strand, 18582515 - 18582945
Alignment:
| Q |
269 |
tttgttaatttacagaatgaaagtgccaagactaagagagagtttcacgaacaaaacaagtatgttgaaaggcttagacagaagcttgataatgtacctc |
368 |
Q |
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| T |
18582515 |
tttgttaatttacagaatgaatgtgccaagactaagagagagtttcacgaacaaaacaagtatgttgaaaggcttagacagaagcttgataatgtacctc |
18582614 |
T |
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| Q |
369 |
aatttcctataagaatggccgaagagacgaaacaaaaattaaccattccttctaaggcaattttggctgatgaatccaaagctgctgttgttgaggtatg |
468 |
Q |
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| T |
18582615 |
aatttcctataagaatggccgaagagacgaaacaaaaattaaccattccttctaaggcaattttggctgatgaatccaaggctgctgttgttgaggtatg |
18582714 |
T |
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| Q |
469 |
tgtaacaattttgtctgagaattgagatcagatgtctttgtaaggaatgattgaatgaacgaaacatgaacaagacagacatgttctcatctgcttaagt |
568 |
Q |
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| T |
18582715 |
tgtaacaattttggctgagaattgagatcagatgtctttgtaaggaatgattgaatgaacaaaacatgaacaagacagacatgttctcatctgcttaagt |
18582814 |
T |
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| Q |
569 |
tcatatttgcaggttttga--nnnnnnnncttatgtttaaattctattcaggtgtacaagacaatcagtttaagcagaaatccaaccttgactagtcagg |
666 |
Q |
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| T |
18582815 |
tcatatttgcaggttttgattttttttttcttatgtttaaattctattcaggtgtacaagacaatcagtttaagcagaaatccaaccttgactagtcagg |
18582914 |
T |
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| Q |
667 |
taacttcaaaagacagaaaaatgataaagat |
697 |
Q |
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| T |
18582915 |
taacttcaaaagacagaaaaatgatagagat |
18582945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 18582193 - 18582458
Alignment:
| Q |
7 |
ggaggagcagagaggaaaaaacaagaagagtttatacatatgctgcaggtatatatttacaatacattcttaaattgaaagatgtagtgtctgaagttat |
106 |
Q |
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| T |
18582193 |
ggagtagcagagaggaaaaaacaagaagagtttatacatatgctgcaggtatatatttacaatacattcttaaattgaaagatgtagtgtctgaagttat |
18582292 |
T |
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| Q |
107 |
gtagcaccgtcactaatgattgaagccatgttcggtgttagaaaaatgttagtgtccgacgtccctgacatgacattgacacatggttttcttattatat |
206 |
Q |
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| T |
18582293 |
gtagcaccgtcactaatgattgaagccatgttcggtgttagaaaaatgttagtgtccgacgtccctaacatgacattgacacgtggttttcttattatat |
18582392 |
T |
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| Q |
207 |
gtgtccacgtattcgtgtcagtgtcgtatctggtgtccttgtctatatcagtgtgtcatatgtttg |
272 |
Q |
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| T |
18582393 |
gtgtccacgtattcgtgtcagtgtcgtgtctggagtctttgtctatgtcaatgtgtcatatgtttg |
18582458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 822 - 895
Target Start/End: Original strand, 18582992 - 18583066
Alignment:
| Q |
822 |
aattggtataccaaggaactaaggttactttgat-aactattgcagtcttgtacaatttgcttaagcaatgagaa |
895 |
Q |
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| T |
18582992 |
aattggtataccaaggaactaaagttactttgattaactattgcagtcttgtacaatttgcttaagcaatgagaa |
18583066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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