View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_high_11 (Length: 466)
Name: NF18481_high_11
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 170 - 459
Target Start/End: Complemental strand, 18090505 - 18090216
Alignment:
| Q |
170 |
cattgtgttggtaacattcttcagaatagtttacacttgaattcagttttgtcacacgaccagcactctgttcaaagaaagaatcatatacattgtgcaa |
269 |
Q |
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| T |
18090505 |
cattgtgttggtaacattcttcagaatagtttactcttgaattcagttttgtcacacgacaagcactctgttcaaagaaagaatcatatacattgtgcaa |
18090406 |
T |
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| Q |
270 |
acacataatattactgtgaagacacataaagtgataaacctgactctacctctttcaaatgaataaaaaagataaattgtaaagagagaaacaaatcata |
369 |
Q |
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| T |
18090405 |
acacataatattactgtgaagacacataaagtgataaacctgactctacctctttcaaatgaataaaaaagataaattgtaaagagaaaaacaaatcata |
18090306 |
T |
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| Q |
370 |
catgcaaaataaaccttgaactacgtgatcgttatactcatgtttatcctcacctcttcatacttctcttattagtcgacacctttgctt |
459 |
Q |
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| T |
18090305 |
catgcaaaataaaccttgaactacgtgatcgttatactcatgtttatcctcacctcttcatacttctcttattagtcgacacctttgctt |
18090216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 301 - 454
Target Start/End: Complemental strand, 18082732 - 18082580
Alignment:
| Q |
301 |
tgataaacctgactctacctctttcaaatgaat-aaaaaagataaattgtaaagagagaaacaaatcatacatgcaaaataaaccttgaactacgtgatc |
399 |
Q |
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| T |
18082732 |
tgataaacctgtctctacctctttcaaatgaatcaaaaaataaaaattgtaaagagaaaaacaaataatacatataaaataaaccttgaactacgtga-- |
18082635 |
T |
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| Q |
400 |
gttatactcatgtttatcctcacctcttcatacttctcttattagtcgacacctt |
454 |
Q |
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| T |
18082634 |
gtttttctcatgtttatcctcaccgcctcatacttctcttattagttgacacctt |
18082580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 18090619 - 18090570
Alignment:
| Q |
98 |
tatacattaaatttctccaagtgaaacgatattttaaaattgttgcataa |
147 |
Q |
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| T |
18090619 |
tatacattaaatttctccaagtgaaacgatattttaaaattgttgcataa |
18090570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 9782396 - 9782446
Alignment:
| Q |
88 |
ttaaagacactatacattaaatttctccaagtgaaacgatattttaaaatt |
138 |
Q |
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| T |
9782396 |
ttaaagacactatttattaaatttctccacgtgaaccgatattttaaaatt |
9782446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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