View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_high_13 (Length: 454)
Name: NF18481_high_13
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 6284273 - 6283845
Alignment:
| Q |
19 |
atataatggcaaaagaacatttttaaaagaatcctcacaccaagcacaccccgaaaaaaccctcccacacgaaagatatcaaccttttgttggcgcacca |
118 |
Q |
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| T |
6284273 |
atataatggcaaaagaacatttttaaaagaatcctcactccaagcacaccccgacaaaaccctcccacgcgaaagatatcaaccttttgttggcgcacca |
6284174 |
T |
|
| Q |
119 |
actagttaatcgttttccttttcgatcttccccaagcctctcacattataaatcaacacaattatttaccactgcttgctttctcccttcttcctttatt |
218 |
Q |
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| T |
6284173 |
actagttaatcattttccttttcgatcttccccaagcttctcacattataaatcaatacaatcattgaccactgcttgctttctcctttcttcctttatt |
6284074 |
T |
|
| Q |
219 |
caactcatcaactttttcatgttctaccgacttcttaagtattgtttcatcctctatattaaaataaattttgtcattcctttgtcaacgaaaaatccct |
318 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
6284073 |
caactcatcaacttcttcaagttctaccgacttcttaagtattgtttcatcctctatattaaaataaattttgtcattcctttgtaagcgaaaaatccct |
6283974 |
T |
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| Q |
319 |
accgcatccaactatttcctacatactctccctccacatttcctccaggtgtttctggaactatagtacccccttcctctatctataatcaatggaggtg |
418 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| |||| |
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| T |
6283973 |
actgcatccaactatttcctacctactctccctccacatttcctccaggtgtttccagaactatcgtacccccttcctctatctataattaatggcggtg |
6283874 |
T |
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| Q |
419 |
ttattggaaaaacctatccttctctgctc |
447 |
Q |
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| T |
6283873 |
ttattggaaaaacctatccttctctgctc |
6283845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 6305719 - 6305577
Alignment:
| Q |
100 |
accttttgttggcgcaccaactagttaatcgttttccttttcgatcttccccaagcctctcacattataaatcaacacaattatttaccactgcttgctt |
199 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||| ||| | |||| |||||| |
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| T |
6305719 |
acctttttttggcgcaccaactagttaatcattttccttttcgatct-ctccaagcctctca--ttataaatcaacacaatcattgatcactagttgctt |
6305623 |
T |
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| Q |
200 |
tctcccttcttcctttattcaactcatcaactttttcatgttctac |
245 |
Q |
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||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
6305622 |
tctcccttcttcctttattcaacacatctgcttcttcatgttctac |
6305577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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