View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_high_20 (Length: 380)
Name: NF18481_high_20
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 362
Target Start/End: Original strand, 45457405 - 45457758
Alignment:
| Q |
12 |
atgaaatgaggggatgaattataa---taataataataagctgtccgtccacagtgacagatcaaggagatacaatataattgattcacattaacgtgaa |
108 |
Q |
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| T |
45457405 |
atgaaatgaggggatgaattataataataataataataagctgtccgtccacagtgacagatcaaggtgatacaatataattgattcacattaacgtgaa |
45457504 |
T |
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| Q |
109 |
gatcactatgtatgtctgaatgaatgcacatgttgtttgtgattgactgtgagtcaatatcataacatatgtgttgatattgatatcatcatattcatac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45457505 |
gatcactatgtatgtctgaatgaatgcacatgttgtttgtgattgactgtgagtcaatatcataacatatgtgttgatattgatatcatcatattcatac |
45457604 |
T |
|
| Q |
209 |
gtgtaatataatgtagtgtagtgtaggggtatatgctactgatctagttcaccatactctatctatgactctatagagaaaaagaaagaattaatacaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45457605 |
gtgtaatataatgtagtgtagtgtaggggtatatgctactgatctagttcaccatactctatctctgactctatagagaaaaagaaagaattaatacaag |
45457704 |
T |
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| Q |
309 |
tgtgtgatcagatcatcttttcttctcttcttattaattacagtacttagtatg |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45457705 |
tgtgtgatcagatcatcttttcttctcttcttattaattacagtacttagtatg |
45457758 |
T |
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