View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_high_24 (Length: 343)
Name: NF18481_high_24
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 10690116 - 10689804
Alignment:
| Q |
19 |
attatatcgttttctaaaatccttattaatctcgacgcgtcagtgttgtatccggtgtctgcttagtataaaattacaacaaacgacataacccaaccca |
118 |
Q |
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| T |
10690116 |
attatatcgttttctaaaatcattaccaatctcaacatgtcagtgtcgtatacagtgtctgcttcatataaaattacaacaaacgacataacccaaccca |
10690017 |
T |
|
| Q |
119 |
accccgaaacacacaaattgcaaggaacaaaactaaaacttacgagtgaaacagttnnnnnnnnntggatgagatagaacgttgacgaacctgctgattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |||| |
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| T |
10690016 |
accccgaaacacacaaattgcaaggaacaaaactaaatcttacgagtgaaacagttaaaaaaaa-tggatgagatagaacgttgacgaacctgttaattt |
10689918 |
T |
|
| Q |
219 |
tgtggcgcttagaagggcgagaattcaccattgaaagtaacggagatcgatgtcgagttagcgggtcttgaagtttgagaatttggaagttgaaaaaatg |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10689917 |
tgtggcgcttagaagggcgagaattcgccattgaaagtaacggagatcgatgtcgagttagcgggtcttgaagtttgagaatttggaagttgaaaaaatg |
10689818 |
T |
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| Q |
319 |
ttgtgtatgaaaac |
332 |
Q |
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|||||||||||||| |
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| T |
10689817 |
ttgtgtatgaaaac |
10689804 |
T |
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