View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_high_28 (Length: 332)
Name: NF18481_high_28
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 36371541 - 36371259
Alignment:
| Q |
17 |
atgagcaggtgctgaaatactattaatattaatattattattgcttttaatttgtgtattgtttggttttccgataaactctcctatcagactcatgcac |
116 |
Q |
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| T |
36371541 |
atgagcaggtgctgaaatactattaatattaatattattattgcttttaatttgtgtattgtttggttttccgataaactctcctatcagactcatgcac |
36371442 |
T |
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| Q |
117 |
ctgctttggaactttgatactttggaacctgaagatggccaatcctcatctctcttctcaagttcatgagcaaacaatgaactgtatctgttcacaatgg |
216 |
Q |
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| T |
36371441 |
ctgctttggaac----------------ctgaagatggccaatcctcatctctcttctcaagttcatgagcaaacaatgaactgtatctgttcacaatgg |
36371358 |
T |
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| Q |
217 |
ttgttagtggtgattttatatacattcgaacacacctacgaggggagcaaaagtccatgcgcaaacccagcatcggaagccagaattcagggaaaacag |
315 |
Q |
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| T |
36371357 |
ttgttagtggtgattttatatacattcgaacacacctacgaggggagcaaaagtccatgcgcaaacccagcatcggaagccagaattcagggaaaacag |
36371259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 36388267 - 36388022
Alignment:
| Q |
30 |
gaaatactattaatattaatattattattgcttttaatttgtgtattgtttggttttccgataaactctcctatcagactcatgcacctgctttggaact |
129 |
Q |
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| T |
36388267 |
gaaatactatcaacattaatattattattggttttaatttgtgtactgtat---tttccgataaacactcgtaccagacacatgcgtctgcgttggaact |
36388171 |
T |
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| Q |
130 |
ttgatactttggaacctgaagatggccaatcctcatctctcttctcaagttcatgagcaaacaatgaactgtatctgttcacaatggttgttagtggtga |
229 |
Q |
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| T |
36388170 |
tggatacttcagagcatgaagatgacaaatccttatctctcttctcaagttcaggagcaaacaatgaactgtatctgttcacaatggtagtgagtggtga |
36388071 |
T |
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| Q |
230 |
ttttatatacattcgaacacacctacgaggggagcaaaagtccatgcgc |
278 |
Q |
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| T |
36388070 |
ttttatttacattcgaagacacctaagatgggatcagaagtccatgcgc |
36388022 |
T |
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