View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18481_high_29 (Length: 330)
Name: NF18481_high_29
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 8336939 - 8337251
Alignment:
| Q |
1 |
ctttggtgagtgaacttactaactaataggtcaggtcgccatttgccgaaaactatttcagcaaaaggcttatacttgatgtgcgtattagggatgtcat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8336939 |
ctttggtgagtgaacttactaaataataggtcaggtcgccattttccgaaaactatttcagcaaaaggcttatacttgatgtgcgtattagggatgtcat |
8337038 |
T |
|
| Q |
101 |
tgaggttgacatcaatagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgaccacttgaaagtt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8337039 |
tgaggttgacatcaacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgagcacttgaaagtt |
8337138 |
T |
|
| Q |
201 |
agttaaggtatatgtagaattaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatattgtaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8337139 |
agttaaggtatatgtagaattaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatatggtaaa |
8337238 |
T |
|
| Q |
301 |
ataagcttaaagt |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8337239 |
ataagcttaaagt |
8337251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 10234055 - 10234367
Alignment:
| Q |
1 |
ctttggtgagtgaacttactaactaataggtcaggtcgccatttgccgaaaactatttcagcaaaaggcttatacttgatgtgcgtattagggatgtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10234055 |
ctttggtgagtgaacttactaactaataggtcaggtcgccatttgctggaaactatttcagcaaaaggcttatacttgatgtgcgtattagagatgtcat |
10234154 |
T |
|
| Q |
101 |
tgaggttgacatcaatagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgaccacttgaaagtt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10234155 |
tgaggttgacatcaacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaacaacacatcattcttgaccacatgaaagtt |
10234254 |
T |
|
| Q |
201 |
agttaaggtatatgtagaattaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtagttgaatatcatggccctaatattgtaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
10234255 |
agttaaggtatatgtagaattaacttcaagtgttttgtcataaacagatttgtatgcagttggaatgagtacttgaatatcatggccctaatatggtaaa |
10234354 |
T |
|
| Q |
301 |
ataagcttaaagt |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10234355 |
ataagcttaaagt |
10234367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University