View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_high_3 (Length: 609)
Name: NF18481_high_3
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 10 - 598
Target Start/End: Original strand, 19897696 - 19898295
Alignment:
| Q |
10 |
agaagcaaaggataaagttctaccgccgaaatttgtgctgaaagtctca--ggttcttatttcaaaatatatatcaaatttcaaaatgttcgtaggttta |
107 |
Q |
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| T |
19897696 |
agaatcaaaggataaagttttaccgccgaaatttgtgctgaaagtctcaaaggttcttatttcaaaatatatatcaaatttcaaaatgttcgtaggttta |
19897795 |
T |
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| Q |
108 |
ttattttacttatttcaaaatgtccattttttgaccaaatctccattttttgtatgatacctccaaattgaaaagaaagtgaatgaattattatgctttt |
207 |
Q |
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| T |
19897796 |
ttattttccttatttcaaaatgtccattttttgaccaaatctccattttttgtatgatagctccaaatagaaaagaaagtgaatgaattattatgctttt |
19897895 |
T |
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| Q |
208 |
tggattattatatctccgtgagagacattagcttttatttttgtcttgtttgatttttatacatgccaatatttatgaaacaacatttatggatcaagaa |
307 |
Q |
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| T |
19897896 |
tggattattatatctccgtgagagacattaacttttatttttgtgttgtttgatttttatacatgccaatatttatgaaacaacatttatggatcaagaa |
19897995 |
T |
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| Q |
308 |
aatcatacgacatagttgattttttattttatagagagaaatgtgtatgtggtgtgtctgaagggtagagaatgaaaggaataaaatgagtagaatnnnn |
407 |
Q |
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| T |
19897996 |
aatcatacgacatagttgattttttattttatagagagaaatgtgtatgtggtgtgtctgaagggtagagaataaaaggaataaaatgagtagaataaaa |
19898095 |
T |
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| Q |
408 |
nnnnntattacccgcatttataagcacaatattatcactataattgggttttttcata---------caattttctcatgttcttttcaatcaaagtctg |
498 |
Q |
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| T |
19898096 |
aaaaatattacccgcatttataagcacaatattatcactgtaattgggttttttcatacaattgtcgcaattttctcatgttcttttcaatcaaagtctg |
19898195 |
T |
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| Q |
499 |
ggcaaaacatcacacaaaggccattattgcaacatgtaataacattgagtgcatcttcgtaacgtaaacaatcatagtcagaatcacaggtacttgacgg |
598 |
Q |
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| T |
19898196 |
ggcaaaacatcacacaaaggccattattgcaacatgtaataacattgagtgcttcttcgtaacgtaaacaatcatagtcagaatcacaggtacttgacgg |
19898295 |
T |
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