View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18481_high_30 (Length: 325)

Name: NF18481_high_30
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18481_high_30
NF18481_high_30
[»] chr5 (1 HSPs)
chr5 (12-306)||(43113836-43114130)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 43113836 - 43114130
Alignment:
Q  12 tcatcagaaattgatccatctgagtaatcatggctatgatctacttcagatccttcagaagttgacaaatgatcttcttggctttcactttctgatccat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43113836 tcatcagaaattgatccatctgagtaatcatggctatgatctacttcagatccttcagaagttgacaaatgatcttcttggctttcactttctgatccat 43113935  T
Q  112 cgatattaacttcttcttgtgcttcattttcttcattacttttctcatcatctgaattcagaaacttttcttctactaatttatcaacatttacttttct 211  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43113936 caatattaacttcttcttgtgcttcattttcttcattacttttctcatcatctgaattcagaaacttttcttctactaatttatcaacatttacttttct 43114035  T
Q  212 ttgctttgatacaataataatatagagaaaagtagaaaaaactattaccatagatgtgtagagcaaagataaaaaaccatatccaaccagaaggt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43114036 ttgctttgatacaataataatatagagaaaagtagaaaaaactattaccatagatgtgtagagcaaagataaaaaaccatatccaaccagaaggt 43114130  T

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