View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_high_33 (Length: 307)
Name: NF18481_high_33
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 8163851 - 8163570
Alignment:
| Q |
18 |
cctccatggtatccattaatggtatatgaaacaggctcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaaatcagcatagg |
117 |
Q |
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| T |
8163851 |
cctccatggtatccattaatggtgtaggaaacaggctcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaaatcagcatagg |
8163752 |
T |
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| Q |
118 |
cttcaaaatccttcctattttattcattaaattaaattaagaataagtttatatactaacttttttgttgttacctttagaaaataatatatttataata |
217 |
Q |
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| T |
8163751 |
cttcaaaatccttcctattttattcattaaattaaattaagaataagtttatacactaacttttttgttgttacctttagaaaataatatatttataata |
8163652 |
T |
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| Q |
218 |
ggttacatttattttacttttgtaatagggtgttacttaagcttacactactttaggactcagaaatcccttatattcatct |
299 |
Q |
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| T |
8163651 |
ggttacatttattttacttttgcaatagggtgttacttaagcttacactattttaggacttagaaatcccttgtattcatct |
8163570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 8139943 - 8139792
Alignment:
| Q |
27 |
tatccattaatggtatatgaaacaggctcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaaatcagcataggcttcaaaat |
126 |
Q |
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|||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | |||| |
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| T |
8139943 |
tatccattgatggtgtatgaataaggttcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaagtcagcatagactgcgaaat |
8139844 |
T |
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| Q |
127 |
ccttcctattttattcattaaattaaattaagaataagtttatatactaactttttt |
183 |
Q |
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| T |
8139843 |
ccttcctgttttatccattaaa-----ttaagaataagtttatatattaaccttttt |
8139792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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