View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_high_5 (Length: 543)
Name: NF18481_high_5
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_high_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 10 - 525
Target Start/End: Complemental strand, 29568844 - 29568329
Alignment:
| Q |
10 |
tcagagagaacataagagtcaaccttatcatctgacagtgaggaaacaatgatgcattccgcaggtgctagaatctcgtctaactgggattttgttagag |
109 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568844 |
tcagagagaacataagagtcaaccttatcatttgacagtgaggaaacaatgatgcattccgcaggtgctagaatctcgtctaactgggattttgttagag |
29568745 |
T |
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| Q |
110 |
atctaagatcctttccttcagggtccaaaaatactcccggttcgaaaaatgatatctctagcctcttttcaaagccttcaaaaccgattgaagaaactgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568744 |
atctaagatcctttccttcagggtccaaaaatactcccggttcgaaaaatgatatctctagcctcttttcaaagccttcaaaaccgattgaagaaactgc |
29568645 |
T |
|
| Q |
210 |
caaggccatattgtttcagaaaaagaaaatgcacagcaccaaaacccgaaagcagtgaacaacgacagcacaattgcaaaaatagagactggaaagacgt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29568644 |
caaggccatattgtttcagaaaaagaaaatgcacagcaccaaaacccgaaagcagtgaacaacaacagcacaattgcaaaaatagagactggaaagacgt |
29568545 |
T |
|
| Q |
310 |
cgtttgaagaagagtactgaatgattaaaattctaacgaaaataaacgcaactaagaaaacacgtttcgagcaaaagtagatcaggatggcttcctagca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568544 |
cgtttgaagaagagtactgaatgattaaaattctaacgaaaataaacgcaactaagaaaacacgtttcgagcaaaagtagatcaggatggcttcctagca |
29568445 |
T |
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| Q |
410 |
cactgcacataattaacaaatacatgtattagcacaagtccataatcaaataagattagtttccaacaaatccagaatcggaatcatttaatcttagaac |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568444 |
cactgcacataattaacaaatacatgtattagcacaagtcattaatcaaataagattagtttccaacaaatccagaatcggaatcatttaatcttagaac |
29568345 |
T |
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| Q |
510 |
ttacgttggagtaagc |
525 |
Q |
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|||||||||||||||| |
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| T |
29568344 |
ttacgttggagtaagc |
29568329 |
T |
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Back To:
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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 363531 - 363578
Alignment:
| Q |
150 |
ttcgaaaaatgatatctctagcctcttttcaaagccttcaaaaccgat |
197 |
Q |
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| T |
363531 |
ttcgaaaaaagttatctcaagcctcttttcatagccttcaaaaccgat |
363578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 5903398 - 5903445
Alignment:
| Q |
150 |
ttcgaaaaatgatatctctagcctcttttcaaagccttcaaaaccgat |
197 |
Q |
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||||||||| | |||||| |||||||||||| |||||||||||||||| |
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| T |
5903398 |
ttcgaaaaaagttatctcaagcctcttttcatagccttcaaaaccgat |
5903445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 5911805 - 5911758
Alignment:
| Q |
150 |
ttcgaaaaatgatatctctagcctcttttcaaagccttcaaaaccgat |
197 |
Q |
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||||||||| | |||||| |||||||||||| |||||||||||||||| |
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| T |
5911805 |
ttcgaaaaaagttatctcaagcctcttttcatagccttcaaaaccgat |
5911758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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