View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_10 (Length: 477)
Name: NF18481_low_10
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 106 - 397
Target Start/End: Complemental strand, 7345112 - 7344832
Alignment:
| Q |
106 |
cgataaaaaatgataatctgatcaaaaattgtttcgtctaagaatcaaacctactttctttcaatcaattcgtctttggtacaactcattaacacttgaa |
205 |
Q |
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| T |
7345112 |
cgataaaaaatgataatctgatcaaagattgtttcgtctaggaatcaaacctactttctttcaatcgattcgtctttggtacaactcattaa-------- |
7345021 |
T |
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| Q |
206 |
ctcaattgcttggttaatggattatttatttcatattttcggactaatatttttatatttaattccaatgatgagcgatatttgctcttttaatgcttca |
305 |
Q |
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| T |
7345020 |
---aattgcttggttaataggttatttatttcatatttccagactaatatttttatatttaattccaatgatgagcgatatttgctcttttaatgcttca |
7344924 |
T |
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| Q |
306 |
taaaagcgattccctgtttttactactgtgaacagcaacattcttnnnnnnncattctttcattgggggaaaaaacattcatcccctatgac |
397 |
Q |
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| T |
7344923 |
taaaagcgattcactgtttttactactgtgaacaacaacattcttaaaaaaacattctttctttgggggaaaaaacattcatcccctatgac |
7344832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 7345401 - 7345297
Alignment:
| Q |
10 |
gtgagatgaacaattgtctttttattttacgttaaccctcctatttgcagaaaaggaccttgataagttggaattcgaccgtggatcaaaatagtccgat |
109 |
Q |
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| T |
7345401 |
gtgacatgaacaattgtctttttattttacgttaaccctcctatttgcagagaaggaccttgataatttggagtttggtcgtggatcaaaatagtccgat |
7345302 |
T |
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| Q |
110 |
aaaaa |
114 |
Q |
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| T |
7345301 |
aaaaa |
7345297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 7344082 - 7344026
Alignment:
| Q |
403 |
ttagtgttatagtaggttgaaacatacttatattgtgacatttaaaaatcaatatag |
459 |
Q |
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| T |
7344082 |
ttagtgttatagtaggttgaaacatacttatattgtgacattttaaaatcaatatag |
7344026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 36018028 - 36018078
Alignment:
| Q |
174 |
ttcgtctttggtacaactcattaac-acttgaactcaattgcttggttaat |
223 |
Q |
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| T |
36018028 |
ttcgtctttggtcaaactcattaaccacttgaactcaattgcttagttaat |
36018078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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