View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18481_low_12 (Length: 456)
Name: NF18481_low_12
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 16072837 - 16073280
Alignment:
| Q |
1 |
taaaatttcgaattttagaattttaattttcaatatcattttattcttctcaaatggagatattcattctttttaggttttattttgatccattcatgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16072837 |
taaaatttcgaattttagaattttaattttcaatatcattttattcttctcaaatggtgatattcattctttttaggttttattttgatccattcatgta |
16072936 |
T |
|
| Q |
101 |
ttgatcaccgtcatgtagttatgtggaaaacaatttgtgcattgaaaccaattcaatatgtgaatcaaacattctaaagaagcctacaccaatttatga- |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16072937 |
ttgatcaccgtcatgtagttatgtggaaaacaatttgtgcattgaaaccaattcaatatgtgaatcaaacattctaaagaagcgtacaccaatttatgac |
16073036 |
T |
|
| Q |
200 |
-agnnnnnnnnctctttgacagtagttgattgcaaattaatggaattattatgtgttcgattattcataatgaaatttgttatgaaaccaatttcttgta |
298 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16073037 |
gaaaaaaaaaactctttgacggtagttgattgcaaattaatggaattattatgtgttcgattattcataatgaaatttgttatgaaaccaatttcttgta |
16073136 |
T |
|
| Q |
299 |
cataatgatcagtgataaaatggtggaacggtactaattcttttagattgaaagcacatatgtttgtatcaaaatcaatctctccatgttatttgccgtc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16073137 |
cataatgatcagtgataaaatggtggaacggtactaattcttttagattgaaggcacacatttttgtatcaaaatcaatctcttcatgctatttgccgtc |
16073236 |
T |
|
| Q |
399 |
ggaatcag---gaagatgtgaaaacacataccataggtattatt |
439 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
16073237 |
ggaatcaggaagaagatgtgaaaaaacataccataggtattatt |
16073280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 19990835 - 19990370
Alignment:
| Q |
1 |
taaaatttcgaattttagaattttaattttcaatatcattttattcttctcaaatggagatattcattctttttaggttttattttgatccattcatgta |
100 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19990835 |
taaaatttcaaaattttaaattttaattttcaatatcattttattcttctcaaatggaaatattcattctttttaggttttattttgatccattcatgta |
19990736 |
T |
|
| Q |
101 |
ttg-----------------atcaccgtcatgtagttatgtggaaaacaatttgtgcattgaaaccaattcaatatgtgaatcaaacattctaaagaagc |
183 |
Q |
| |
|
||| ||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
19990735 |
ttgatgcaactccaccatttatcactgtcatgtagtggtgtggaaaacaatcggtgcattgaaaccaattcaatatttgaacgaaacattctaaagaagc |
19990636 |
T |
|
| Q |
184 |
ctacaccaatttatgaagnnnnnnnnctctttgacagtagttgattgcaaattaatggaattattatgtgttcgattattcataatgaaatttgttatga |
283 |
Q |
| |
|
|||||||||||||||||| || ||||| ||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
19990635 |
ctacaccaatttatgaagaaaagaaactgtttgaaagtcgttgattgcaaattagtggatttatgatgtgttcgattattcataatgaaattttttatga |
19990536 |
T |
|
| Q |
284 |
aaccaatttcttgtacataatgat------cagtgataaaatggtggaacggtactaattcttttagattgaaagcacatatgtttgtatcaaaatcaat |
377 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| |||||||||| || |||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
19990535 |
aaccaatttcttatacataatgatttgtagcagtgataaaatagtggaacggttctgattcttttagattgaaggcacacatgtttgtatcaaaatcaat |
19990436 |
T |
|
| Q |
378 |
ctctccatgttatttgccgtcggaatcag---gaagatgtgaaaa-cacataccataggtattatt |
439 |
Q |
| |
|
|| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||||| |
|
|
| T |
19990435 |
ctttccatgttatttgtcgtcggaatcaggaagaagatgtgaaaagaacataccatagggattatt |
19990370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 28314376 - 28314338
Alignment:
| Q |
11 |
aattttagaattttaattttcaatatcattttattcttc |
49 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
28314376 |
aattttagaatttcaattttcaatatcgttttattcttc |
28314338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 48208156 - 48207725
Alignment:
| Q |
1 |
taaaatttcgaattttagaattttaattttcaatatcattttattcttctcaaatggagatattcattctttttaggttttattttgatccattcatgta |
100 |
Q |
| |
|
||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48208156 |
taaaatttcaaaattttgaattttaattttcaatatcattttattcttctcaaatggagatattcattctttttagattttattttgatccattcatgta |
48208057 |
T |
|
| Q |
101 |
ttg-----------------atcaccgtcatgtagttatgtggaaaacaatttgtgcattgaaaccaattcaatatgtgaatcaaacattctaaagaagc |
183 |
Q |
| |
|
||| ||||| |||||||| | ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
48208056 |
ttgatgcaactgcaccatttatcactgtcatgta-tggtgtggaaaacaatcggtgcattgaaaccaattcaatatttgaacgaaacattctaaagaagc |
48207958 |
T |
|
| Q |
184 |
ctacaccaatttatgaag--nnnnnnnnctctttgacagtagttgattgcaaattaatggaattattatgtgttcgattattcataatgaaatttgttat |
281 |
Q |
| |
|
|||||||||||||||||| || ||||| ||| |||||| |||||||| |||| |||| || ||||||||||||||||||||||| | || |
|
|
| T |
48207957 |
ctacaccaatttatgaagaaaaaaaaaactgtttgaaagtcgttgatagcaaattagtggatttatgat---ttcgattattcataatgaaatttttgat |
48207861 |
T |
|
| Q |
282 |
gaaaccaatttcttgtacataatgat------cagtgataaaatggtggaacggtactaattcttttagattgaaagcacatatgtttgtatcaaaatca |
375 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||||| ||| |
|
|
| T |
48207860 |
gaaaccaatttcttatacataatgatttgtagcagtgataaaatagtggaacggttctaattcttttagattgaaggcacgcatgtttgtatcaaattca |
48207761 |
T |
|
| Q |
376 |
atctctccatgttatttgccgtcggaatcaggaaga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
48207760 |
atctctccatgttatttgccgtcggaatcaggaaga |
48207725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 33637167 - 33637252
Alignment:
| Q |
12 |
attttagaattttaattttcaatatcattttattcttctcaaatggagat--attcattctttttaggttttattttgatccattcat |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | ||| || ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
33637167 |
attttagaattttaattttcaatatcattttattctgctcta--ggaaatcgattcattctttttaggttttattttaatcaattcat |
33637252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 411
Target Start/End: Original strand, 33638129 - 33638203
Alignment:
| Q |
335 |
attcttttagattgaaagcacatatgtttgtatcaaaatcaatctctccatgttatttgccgtcggaatcaggaaga |
411 |
Q |
| |
|
|||||||| ||||||| |||| |||||||| ||||||||||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
33638129 |
attcttttggattgaaggcacgcatgtttgtgtcaaaatcaatctttccatgt--tttgccgttggaatcaggaaga |
33638203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 33637886 - 33637965
Alignment:
| Q |
122 |
tgtggaaaacaatttgtgcattgaaaccaattcaatatgtgaatcaaacattctaaagaagcctacaccaatttatgaag |
201 |
Q |
| |
|
||||||||| ||| ||||||||| || |||||||||| ||| ||||||||||||| || |||||||||| || ||||| |
|
|
| T |
33637886 |
tgtggaaaataatcggtgcattgatacaaattcaatatccgaaccaaacattctaaaaaaccctacaccaaattctgaag |
33637965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 263299 - 263261
Alignment:
| Q |
11 |
aattttagaattttaattttcaatatcattttattcttc |
49 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
263299 |
aattttagaatttcaattttcaatatcgttttattcttc |
263261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 54695466 - 54695428
Alignment:
| Q |
11 |
aattttagaattttaattttcaatatcattttattcttc |
49 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
54695466 |
aattttagaatttcaattttcaatatcgttttattcttc |
54695428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 673930 - 674018
Alignment:
| Q |
5 |
atttcgaattttagaattttaattttcaatatcattttattcttctcaaatggagat--attcattctttttaggttttattttgatccat |
93 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||||||||||||| || | |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
673930 |
atttcaaattttaaaattttaattttgaatatcattttattcttttcta--ggagatcgattcattcttttcaggttttattttgatccat |
674018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 29156688 - 29156650
Alignment:
| Q |
11 |
aattttagaattttaattttcaatatcattttattcttc |
49 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
29156688 |
aattttagaatttcaattttcaatatcgttttattcttc |
29156650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University