View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18481_low_14 (Length: 454)

Name: NF18481_low_14
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18481_low_14
NF18481_low_14
[»] chr3 (14 HSPs)
chr3 (1-436)||(24632304-24632744)
chr3 (47-213)||(24645723-24645888)
chr3 (270-404)||(24717029-24717163)
chr3 (336-415)||(24640397-24640475)
chr3 (321-419)||(24713765-24713862)
chr3 (337-419)||(24718956-24719037)
chr3 (336-415)||(24675496-24675574)
chr3 (336-419)||(24691598-24691680)
chr3 (310-419)||(24654524-24654634)
chr3 (321-433)||(24652363-24652475)
chr3 (310-429)||(24682902-24683023)
chr3 (62-134)||(24716012-24716084)
chr3 (163-224)||(24637480-24637541)
chr3 (276-366)||(24686205-24686298)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 24632304 - 24632744
Alignment:
Q  1 tacataaaacaaaaaggaaaatcaattattt-aagtaacatagaagaaatttaaaacagatgcatgagacattttctttcttttatggaggtggagcagc 99  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632304 tacataaaacaaaaaggaaaatcaattattttaagtaacacagaagaaatttaaaacagatgcatgagacattttctttcttttatggaggtggagcagc 24632403  T
Q  100 accaatgaaaatgtgcagaaatcagctcggagtatttttaaaacagattgaaaaaagcaagccataaattatgttttagatttctttccatc----atga 195  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    ||||    
T  24632404 accaatgaaaatgtgcagaaatcatctcggagtatctttaaaacagattgaaaaaagcaagccataaattatgttttagatttctttcgatcgatcatga 24632503  T
Q  196 ccattataagaaataatagcttgattcctgtagaaaaatatttctcatactatttctgttatgaataaagtacagatgctaggagaccaccaaaaataat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632504 ccattataagaaataatagcttgattcctgtagaaaaatatttctcatactatttctgttatgaataaagtacagatgctaggagaccaccaaaaataat 24632603  T
Q  296 cattcaggatacgggaaaaacaggagcataatattgctcaaggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgc 395  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632604 cattcaggatacgagaaaaacaggagcataatattgctcaaggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgc 24632703  T
Q  396 aatgaaatgtaaattcttcatgctatcaagaacagtgataa 436  Q
    |||  ||||||||||||||||||||||||||||||||||||    
T  24632704 aatctaatgtaaattcttcatgctatcaagaacagtgataa 24632744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 47 - 213
Target Start/End: Original strand, 24645723 - 24645888
Alignment:
Q  47 aatttaaaacagatgcatgagacattttctttcttttatggaggtggagcagcaccaatgaaaatgtgcagaaatcagctcggagtatttttaaaacaga 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  24645723 aatttaaaacagatgcatgagacattttctttcttttatggaggtggagcagcaccaatgaaaatgtgcagaaatcagctgggagta-tcttaaaacaga 24645821  T
Q  147 ttgaaaaaagcaagccataaattatgttttagatttctttccatcatgaccattataagaaataata 213  Q
    ||||||||||||||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||    
T  24645822 ttgaaaaaagcaagcaataaattatgttttatatttttttcaatcatgaccattataagaaataata 24645888  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 270 - 404
Target Start/End: Original strand, 24717029 - 24717163
Alignment:
Q  270 gatgctaggagaccaccaaaaataatcattcaggatacgggaaaaacaggagcataatattgctcaaggtttgctgaactctgcaaataatacatgtgtt 369  Q
    |||||||||||||||||||||| | |||  || |||||  ||||||| ||  ||||||||||||  ||||||||||||||||||||||||||||||| |     
T  24717029 gatgctaggagaccaccaaaaagactcaaccaagatacaagaaaaactggttcataatattgcttgaggtttgctgaactctgcaaataatacatgtatc 24717128  T
Q  370 aaactaccatttttcgaaacccttgcaatgaaatg 404  Q
    |||||||||||||||||||||||||  ||||||||    
T  24717129 aaactaccatttttcgaaacccttgtgatgaaatg 24717163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 24640397 - 24640475
Alignment:
Q  336 aggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatgaaatgtaaattcttca 415  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||  ||| ||| || |||||||||||||    
T  24640397 aggtttgctgaactctgcaaataatacatgtatt-aactaccatttttcgaaacagttggaattaattgtaaattcttca 24640475  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 419
Target Start/End: Original strand, 24713765 - 24713862
Alignment:
Q  321 gcataatattgctcaaggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatgaaatgtaaattcttcatgct 419  Q
    |||||||||||||  | ||||||||||||||||| || ||||| || | || |||||||||||||||||||||||| | ||||||||||||||| ||||    
T  24713765 gcataatattgcttgatgtttgctgaactctgcatattatacaagtatcaa-ctaccatttttcgaaacccttgcactaaaatgtaaattcttcctgct 24713862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 24718956 - 24719037
Alignment:
Q  337 ggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatgaaatgtaaattcttcatgct 419  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||| ||||   |||||||||| |||||||||||||||||    
T  24718956 ggtttgctgaactctgcatataatacatgtattaa-ctaccattttttgaaatagttgcaatgaattgtaaattcttcatgct 24719037  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 24675496 - 24675574
Alignment:
Q  336 aggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatgaaatgtaaattcttca 415  Q
    |||||||||||||||||||||||||||| || || |||||||||||||||||||  || ||||||| ||||| |||||||    
T  24675496 aggtttgctgaactctgcaaataatacacgtatt-aactaccatttttcgaaacagtttcaatgaattgtaagttcttca 24675574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 419
Target Start/End: Original strand, 24691598 - 24691680
Alignment:
Q  336 aggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatgaaatgtaaattcttcatgct 419  Q
    |||||||| ||||||||||||||||||| || |||| ||||||| |||||||||  |||||||||| ||||| |||||||||||    
T  24691598 aggtttgccgaactctgcaaataatacaagtattaa-ctaccatatttcgaaacagttgcaatgaattgtaagttcttcatgct 24691680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 419
Target Start/End: Original strand, 24654524 - 24654634
Alignment:
Q  310 gaaaaacagga-gcataatattgctcaaggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatgaaatgtaaa 408  Q
    ||||||||||| |||||||||| ||| | ||||||| ||||||||||||||||||||  |||||||| |||   || ||| | ||||||||||| | |||    
T  24654524 gaaaaacaggacgcataatattactcgatgtttgcttaactctgcaaataatacatgcattaaactatcatagctccaaatcattgcaatgaaaagaaaa 24654623  T
Q  409 ttcttcatgct 419  Q
    |||||||||||    
T  24654624 ttcttcatgct 24654634  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 433
Target Start/End: Original strand, 24652363 - 24652475
Alignment:
Q  321 gcataatattgctcaaggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatgaaatgtaaattcttcatgct- 419  Q
    |||||||||||||  |  |||||||||||||||||||||||||||| || |||||| ||||| ||||||  ||||||||||  ||| |||||||  |||     
T  24652363 gcataatattgcttgatttttgctgaactctgcaaataatacatgtatt-aactacaattttacgaaacagttgcaatgaatcgtacattcttctggctc 24652461  T
Q  420 atcaagaacagtga 433  Q
    ||||||||||||||    
T  24652462 atcaagaacagtga 24652475  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 24682902 - 24683023
Alignment:
Q  310 gaaaaacagga-gcataatattgctcaaggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatgaaatgtaaa 408  Q
    ||||||||||| ||||||| || ||| | ||||||  ||||||||||||||||||||  ||||||||||||   || ||| | ||||||||||| | |||    
T  24682902 gaaaaacaggacgcataatgttactcgatgtttgcataactctgcaaataatacatgcattaaactaccatagctccaaatcattgcaatgaaaagaaaa 24683001  T
Q  409 ttcttcatgct-atcaagaaca 429  Q
    ||||||||||| ||||||||||    
T  24683002 ttcttcatgctcatcaagaaca 24683023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 24716012 - 24716084
Alignment:
Q  62 catgagacattttctttcttttatggaggtggagcagcaccaatgaaaatgtgcagaaatcagctcggagtat 134  Q
    |||||||||||||||||||||||  ||||||||||||||   |||||||||||||||||| || | |||||||    
T  24716012 catgagacattttctttcttttaccgaggtggagcagcatatatgaaaatgtgcagaaattagttgggagtat 24716084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 24637480 - 24637541
Alignment:
Q  163 ataaattatgttttagatttctttccatcatgaccattataagaaataatagcttgattcct 224  Q
    ||||||||||||| ||||  ||||| ||||| ||||||||||||||||| ||||||||||||    
T  24637480 ataaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcct 24637541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 24686205 - 24686298
Alignment:
Q  276 aggagaccaccaaaaataatcattc-ag-gatacgggaaaaacagga-gcataatattgctcaaggtttgctgaactctgcaaataatacatgt 366  Q
    |||||||||||||||| || ||||| || |||||| ||||||||||  |||||||||||||  | |||||||||| ||||||||||||||||||    
T  24686205 aggagaccaccaaaaagaaccattccagcgatacgagaaaaacaggttgcataatattgcttgatgtttgctgaattctgcaaataatacatgt 24686298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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