View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_15 (Length: 448)
Name: NF18481_low_15
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 148 - 433
Target Start/End: Complemental strand, 17292094 - 17291808
Alignment:
| Q |
148 |
attatctcaatcatatttgtatttattgaatgtatgtgtattaaattattaattgttgtttggaagaaaattattactcaacatgatgtgtgatggtctt |
247 |
Q |
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| T |
17292094 |
attatcttaatcatatttgtatttattgaatgtatgtgtattaaattattaattgttgtttagaagaaaaatattactcaacatgatgtgtgatggtttt |
17291995 |
T |
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| Q |
248 |
ttttaaagactaattctagctctggtcctttaactaagaaacaaagaccaatgtgtgttggaatttcttttatactccaccatatatgttttaattatt- |
346 |
Q |
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| T |
17291994 |
tttgaaagactaattctagctctggtcctttaactaagaaacaaagaccaatgtgtgttggaatttcttttatactccaccatatatgttttaattaata |
17291895 |
T |
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| Q |
347 |
-agagtttgggtatgattgtatttaaattattaaagttannnnnnnaaaatgaatgagctacttaccatatgaaacaccgtttcattt |
433 |
Q |
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| T |
17291894 |
aagagtttgggtatgattgtatttaaattattaaagtta-ttttttaaaatgaatgagctacttaccatatgaaacaccgtttcattt |
17291808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 17292266 - 17292154
Alignment:
| Q |
16 |
agaaacacccatcaaggttgtgggatagatggcacaatcgctaatgaaatctgtcactcaaactaccgctggtggaattcagaaacaacgatatcgcaac |
115 |
Q |
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| T |
17292266 |
agaaacacccatcaaggttgtgggatagatggtacaattgctaatcaaatctgccactcgaactaccgctggtggaactcagaaacaacgatatcgcaac |
17292167 |
T |
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| Q |
116 |
gttaatttccagt |
128 |
Q |
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| T |
17292166 |
attaatttgcagt |
17292154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 27714992 - 27715096
Alignment:
| Q |
194 |
tattaattgttgtttggaagaaaatt-attactcaacatgatgtgtgatggtctttttt--aaagactaattctagctctggtcctttaactaagaaaca |
290 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||| ||||||| || ||| | || || |||||||| ||||||||| |||| ||||||||| |
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| T |
27714992 |
tattaaatgttgtttggaagaaaattgattactcaacatg---tgtgatgatcctttgtgtaaggattaattctaactctggtccattaaataagaaaca |
27715088 |
T |
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| Q |
291 |
aagaccaa |
298 |
Q |
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|| ||||| |
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| T |
27715089 |
aataccaa |
27715096 |
T |
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