View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_16 (Length: 432)
Name: NF18481_low_16
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 10254710 - 10255115
Alignment:
| Q |
10 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254710 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctc |
10254809 |
T |
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| Q |
110 |
caacacaatgtcaaatcatcaaaggtacactcccgccgtcacttaacggtgcttacataagaaacggaccaaacccacagttccttccacgtggacccta |
209 |
Q |
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| T |
10254810 |
caacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataagaaacggaccaaacccacagttccttccacgtggacccta |
10254909 |
T |
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| Q |
210 |
ccacctcttcgacggtgacggcatgcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatc |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254910 |
ccacctcttcgacggtgatggcatgcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatc |
10255009 |
T |
|
| Q |
310 |
gaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtca |
409 |
Q |
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| T |
10255010 |
gaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtca |
10255109 |
T |
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| Q |
410 |
tatctg |
415 |
Q |
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| T |
10255110 |
tatctg |
10255115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 10231115 - 10230739
Alignment:
| Q |
10 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctc |
109 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10231115 |
gacattatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtcctagacgaactccctc |
10231016 |
T |
|
| Q |
110 |
caacacaatgtcaaatcatcaaaggtacactcccgccgtcacttaacggtgcttacataagaaacggaccaaacccacagttccttccacgtggacccta |
209 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10231015 |
caacacaatgtgtaatcatcaaaggtacactcccgccgtcactttacggtgcttacataagaaacggaccaaacccacagttccttccacgtggacccta |
10230916 |
T |
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| Q |
210 |
ccacctcttcgacggtgacggcatgcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatc |
309 |
Q |
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||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || |||| ||||| |||||||| |
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| T |
10230915 |
ccatctctttgacggtgacggcatgcttcatgccattacaatctcaaacgggaaagccacactatgtagccgttatgtaaaaacctacaagtacaaaatt |
10230816 |
T |
|
| Q |
310 |
gaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaactcgcttatagcttctgctgcacgtgg |
386 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
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| T |
10230815 |
gaaaacaaagctggtcaccaacttatcccaaacgtgttttctggtttcaactcgcttattgctttagcggcacgtgg |
10230739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 368
Target Start/End: Complemental strand, 10239895 - 10239537
Alignment:
| Q |
10 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239895 |
gacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctc |
10239796 |
T |
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| Q |
110 |
caacacaatgtcaaatcatcaaaggtacactcccgccgtcacttaacggtgcttacataagaaacggaccaaacccacagttccttccacgtggacccta |
209 |
Q |
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|||||||||| || |||| ||||| ||||| || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
10239795 |
caacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgtttacataagaaacggaccaaaccctcagttccttccacgtggacctta |
10239696 |
T |
|
| Q |
210 |
ccacctcttcgacggtgacggcatgcttcacgccattacaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatc |
309 |
Q |
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||| ||||| |||||||||||||||||||| || ||| |||| ||||||||||||| ||||| |||||||||||||||||||| || |||||||||||| |
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| T |
10239695 |
ccatctctttgacggtgacggcatgcttcatgctgttaaaatcacaaacggaaaagccacactatgtagccgttacgttcaaacctataaatacaaaatc |
10239596 |
T |
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| Q |
310 |
gaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaactcgcttat |
368 |
Q |
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| T |
10239595 |
gaaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttat |
10239537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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