View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18481_low_18 (Length: 416)
Name: NF18481_low_18
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_18 |
 | |
|
| [»] scaffold0334 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold1407 (1 HSPs) |
| | |
|
| [»] scaffold0226 (1 HSPs) |
| | |
|
| [»] scaffold0035 (2 HSPs) |
| | |
|
| [»] scaffold0158 (2 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
| [»] scaffold0453 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0513 (1 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 11176936 - 11177268
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
11176936 |
tgtatttcaaaatcaattcctaaaaattctacagtcagatacaggtttcactctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaat |
11177035 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|| || ||| |||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177036 |
attcatcgttaaaaatcagaattttcagactt--aaaaacaattcctgttacaatttataatcatacaaattaacagagcaccattggtacgacattcat |
11177133 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacataactaaattataatctaaatttaactctaatgaactcatattcaaggtaaaaggaaaagaaacga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11177134 |
cacattccggactctatgaaaatctactcagacataactaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaacga |
11177233 |
T |
|
| Q |
301 |
aacctgttatagttggagtctttaattgagtacaa |
335 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11177234 |
aacctgttatagttgtagtctttaattgagtacaa |
11177268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 11296250 - 11296495
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| ||| ||||||||||||| || ||||||||||||| | ||||||| |||||| ||| || |
|
|
| T |
11296250 |
tgtatttcaaaatcaattcctaaaaattctatggacagagacaagtttcactctttcaatgtgaaaccggtatcgcgttatttcagttttcattgtacat |
11296349 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|| || ||| ||||||| |||||| |||||| ||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
11296350 |
attcatcgttaaaaatcaaaattttcagactt--aaaaataattcatgttacaattagcaatgatacaaattaacagagcatcattggtacggcattcat |
11296447 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacataactaaattataa |
248 |
Q |
| |
|
|| |||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
11296448 |
catattccggactctataaaaatctactaagacataattaaattataa |
11296495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 23047491 - 23047331
Alignment:
| Q |
6 |
ttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgttaa |
105 |
Q |
| |
|
||||||||||||| || || |||||| |||||||||||||||||||| || |||||||||||||||| | ||||||||||||| |||||| || |
|
|
| T |
23047491 |
ttcaaaatcaatttctgaattttctacaatcagatacaggtttcactctctcaatatgaaaccggtatcgcattatttcaactttcgctgtaaatatttg |
23047392 |
T |
|
| Q |
106 |
ttgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcataca |
168 |
Q |
| |
|
| || |||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
23047391 |
tatttaaaaatcagaattttcaga--tttaaaaataattccggttacaattattaatcataca |
23047331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 17125 - 16723
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| || ||||||| |||| || ||||| ||||||| |
|
|
| T |
17125 |
tgtatttcaaaatcaattcctaaaaattctacagtcagatataggtttcactctttcgatatgaaatcgatatcactttattccagctttcgccgtaaat |
17026 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|| || || |||||||||||||| | |||| |||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
17025 |
attcatcttttaaaatcagaattttcaaactt--aaaaccaattcctgttacaatttaaaatcatacaatttaacagagtaccattggtacgacgttcat |
16928 |
T |
|
| Q |
201 |
cacattccggactctatgaaaat-ctactcagacataactaaattataatctaaatttaactctaatgaactcatattcaaggtaaaaggaaaagaaacg |
299 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16927 |
cacattccggactctataaaaaaactactcaaacatagctaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaacg |
16828 |
T |
|
| Q |
300 |
aaacctgttatagttggagtctttaattgagtacaatttccactgctatgaagaaaactctaccaatatgctttaa---aatcaagtcacgacaatgggc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
16827 |
aaacctgttatagttggagtctttaattgagtacaatttccactgctatgaagaaaactctaccaatatgctttaaaacaaccaagtcacgacaatgggc |
16728 |
T |
|
| Q |
397 |
ataat |
401 |
Q |
| |
|
||||| |
|
|
| T |
16727 |
ataat |
16723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 18477048 - 18477281
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
18477048 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccgatatcactgtatttcaactttcattgtaaat |
18477147 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18477148 |
gttaattgtttaaaatcagaatttttagac-tttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
18477246 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
18477247 |
cacattccggactctatgaaaatctactcagacat |
18477281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 18487144 - 18487377
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18487144 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcattgtaaat |
18487243 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18487244 |
gttaattgtttaaaatcagaatttttagac-tttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccgttggtacgacattcat |
18487342 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
18487343 |
cacattccggactctatgaaaatctactcagacat |
18487377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 7588483 - 7588658
Alignment:
| Q |
45 |
gtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataatt |
144 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||| || ||||| | ||||| || || ||| |||||||||| | | || | |||||||||||| |
|
|
| T |
7588483 |
gtttcactctttcgatatgaaaccagtatcgcgttattccagctttcgccctaaatattcatcgttaaaaatcagaagtatcaggc--ttaaaaataatt |
7588580 |
T |
|
| Q |
145 |
cctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaat |
223 |
Q |
| |
|
| |||||||||| ||||||||||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
7588581 |
ctagttacaatttataatcatacaatttaaca-agtaccattggtacgaggttcatcatattccggactctataaaaat |
7588658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 14224425 - 14224182
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14224425 |
tgtatttcaaaatcaattcctaaaaattctaccgtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcattgtaaat |
14224326 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14224325 |
gttaattgtttaaagtcagaatttttagac-tttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
14224227 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacataactaaatta |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
14224226 |
cacattccggactctatggaaatctactcagacataattaaatta |
14224182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 14234520 - 14234277
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14234520 |
tgtatttcaaaatcaattcctaaaaattctaccgtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcattgtaaat |
14234421 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14234420 |
gttaattgtttaaagtcagaatttttagac-tttaaaaataattcatgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
14234322 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacataactaaatta |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
14234321 |
cacattccggactctatggaaatctactcagacataattaaatta |
14234277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 11165042 - 11164810
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||| |
|
|
| T |
11165042 |
tgtatttcaaaatcaattcctaaaaattctacagtcagatacatgtttcactctttcgatatgaaactggtatcactttatttcagctttcgccgtaaat |
11164943 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|| || ||| |||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||| ||||||||| | ||| ||||||||||| | |
|
|
| T |
11164942 |
attcatcgttaaaaatcagaattttcagac--ttaaaaacaattcctgttacaatttctaaacatacaacttaacagagtatcatcagtacgacattcgt |
11164845 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
11164844 |
cacattccagaccctatggaaatctactcagacat |
11164810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 45 - 230
Target Start/End: Complemental strand, 16636513 - 16636330
Alignment:
| Q |
45 |
gtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataatt |
144 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| || ||||| | |||||| | || ||| ||| |||||||||| | |||| |||||||||| |
|
|
| T |
16636513 |
gtttcactgtttcgatatgaaaccggtatcactttattccatctttcgttgtaaatatccatcgttaaaactcagaattttcaaactt--aaaaataatt |
16636416 |
T |
|
| Q |
145 |
cctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactca |
230 |
Q |
| |
|
|||||||||| ||||||||||| |||||| | | |||| ||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
16636415 |
actgttacaatcagtaatcatacaacttaacatattatcattcgtacgacgttcatcacattccggactctataaaaatctactca |
16636330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 50879304 - 50879473
Alignment:
| Q |
28 |
tctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgttaattgttgaaaatcagaattttta |
127 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||| | |||| || ||||| ||||||| || || ||||| |||||||||||| | |
|
|
| T |
50879304 |
tctacggacagatacatgtttcactctttcgatatgaaaccggtatcgcattattccagttttcaccgtaaatattcatcgttgataatcagaattttca |
50879403 |
T |
|
| Q |
128 |
gacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattca |
199 |
Q |
| |
|
| |||||||||||||| |||||||| ||||||||||| |||||| |||| |||| |||||| |||| |
|
|
| T |
50879404 |
agc--ttaaaaataattcccattacaattactaatcatacagtttaacatagcatcattaatacgacgttca |
50879473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 27079645 - 27079900
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatat----gaaaccggtatcactgtatttcaactttcatcgt |
96 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||| |||| ||||||| ||||||| |||| | || |
|
|
| T |
27079645 |
tgtatttcaaaatcaatttctaaattttctacggtaccatacaggttttactctttcgatatgaaagaaagaaatatcactttatttcagctttatttgt |
27079744 |
T |
|
| Q |
97 |
aaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacat |
196 |
Q |
| |
|
|||| || |||||| |||||||||||||| |||| || ||||||||||||||| |||| ||||||||||| |||||| | | |||| || || | |
|
|
| T |
27079745 |
aaatatttattgttaaaaatcagaattttcagac-ttaaaaaataattcctgt----atttttaatcatacaacttaacataatataattgatataacgt |
27079839 |
T |
|
| Q |
197 |
tcatcacattccggactctatgaaaatctactcagacataactaaa-ttataatctaaatt |
256 |
Q |
| |
|
| |||| |||||||| || || ||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
27079840 |
taatcatattccggattcgataaaaatctactcagacgtaactaaatttataatccaaatt |
27079900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 50884459 - 50884505
Alignment:
| Q |
28 |
tctacggtcagatacaggtttcactctttcgatatgaaaccggtatc |
74 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
50884459 |
tctacggacagatacatgtttcactcttccgatatgaaatcggtatc |
50884505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 33140 - 32910
Alignment:
| Q |
4 |
atttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgtt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33140 |
atttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcattgtaaatgtt |
33041 |
T |
|
| Q |
104 |
aattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcac |
203 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33040 |
aattgtttaaaaccagaatttttagac-tttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacaacattcatcac |
32942 |
T |
|
| Q |
204 |
attccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |
|
|
| T |
32941 |
attccggactctataaaaatctactcagacat |
32910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 187066 - 186835
Alignment:
| Q |
3 |
tatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |
|
|
| T |
187066 |
tatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactttatttcaactttcattgtaaatat |
186967 |
T |
|
| Q |
103 |
taattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatca |
202 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
186966 |
taattgtttaaaatcagaatttttaga-gtttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacaacattcatca |
186868 |
T |
|
| Q |
203 |
cattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
186867 |
cattccggactctatggaaatctactcagacat |
186835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 19900957 - 19901191
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
19900957 |
tgtatttcaaaatcaattcctaaaaattctccggtcagatacaggtttcactcttttgatatgaaaccggtatcactgtatttcaacttttattgtaaat |
19901056 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19901057 |
gttaattgtttaaaatcagaatttttagac-tttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
19901155 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacataa |
237 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19901156 |
cacattccggactctatg-gaatctactcagacataa |
19901191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 18294310 - 18294426
Alignment:
| Q |
119 |
gaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatg |
218 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
18294310 |
gaatttttagacttc--aaaataattcatgttacaatttctaatcatacaacttaacaatgtaccattggtacgacaatcatcacattccagactctata |
18294407 |
T |
|
| Q |
219 |
aaaatctactcagacataa |
237 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
18294408 |
aaaatctactcaaacataa |
18294426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 20933426 - 20933661
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
20933426 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcattgtatttcaactttaattgtaaat |
20933525 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20933526 |
gttaattgtttaaaatcagaatttttagac-tttaaaaataattcctgttataatttctaatcatacaaattaacagagcaccattggtacgacattcat |
20933624 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacataa |
237 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
20933625 |
cacattccggactctatggaaatctagtcggacataa |
20933661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19184259 - 19184029
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
19184259 |
tgtatttcaaaatcaattcctaaaaattccatgatcagatacagatttcactctttcgatatgaaaccggtgtcactttatttcaactttcgctgtaaat |
19184160 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||| |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19184159 |
attaattgttaaaaatcagaattttcagac--ttaaaaacaatttctgttacagtttctaatcatacaacttaacagagcaccattggtacgacattcat |
19184062 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||| |
|
|
| T |
19184061 |
cacattccggactc--tggaaatctactcggacat |
19184029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 34658010 - 34657778
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| |
|
|
| T |
34658010 |
tgtatttcaaaaccaatttctgaatcttctacggtcagatacaggtttcactctttcgatatgaaatcggtatcactttatttcaactttcgctgtaaat |
34657911 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
||||| ||| |||||||||||||| | || ||||||| |||||| ||||||||||||| ||||||| ||||||||| | || |||||||| ||| | |
|
|
| T |
34657910 |
attaatcgttaaaaatcagaattttcaaac--ttaaaaacaattccaattacaatttctaaacatacaacttaacagagtattatcggtacgacgttcgt |
34657813 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34657812 |
cacattccggactctataaaaatctactcagacat |
34657778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20928845 - 20928759
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaac |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20928845 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttagatatgaaaccggtatcactgtatttcaac |
20928759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 31233175 - 31233052
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
||||||||||||| ||| || ||| ||||| ||| ||||||| ||||||||||||||| |||||||| ||||||| ||||||| ||||| ||||||| |
|
|
| T |
31233175 |
tgtatttcaaaattcatttctgaaatttctaaggttagatacaagtttcactctttcgacatgaaacctatatcactttatttcagctttcgccgtaaat |
31233076 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaattt |
124 |
Q |
| |
|
|| || || ||||||||||||| |
|
|
| T |
31233075 |
atttatccttaaaaatcagaattt |
31233052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 689 - 924
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
689 |
tgtaattcaaaatcaattcctaaaaattctacggtcagatacatgtttcactctttcgatatgaaaccgatatcactgtatttcaactttcattgtaaat |
788 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
789 |
gttaattgtttaaaatcagaatttttagac-ttaaaaaataattcctgttacaatttctaatcatacaaattaacagagcatcattggtacgacattcat |
887 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacataa |
237 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
888 |
cacgttccggactttatgaaaatctactcagacataa |
924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4513 - 4278
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
4513 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaacctttatcactgtatttcaactttcattgtaaat |
4414 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
4413 |
gttaattgtttaaaatcagaatttttagac-cttaaaaataattcctgttacaatttctagtcatacaaattaacagagcatcattggtacaacattcat |
4315 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacataa |
237 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
4314 |
cacattccggactctataaaaatctactctgacataa |
4278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 87193 - 87429
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
87193 |
tgtatttcaaaatcaattcctaaacattctacggtcagatacaggtatcactctttcgatatgaaaccggtatcactgtatttcaactttcattgtaaag |
87292 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttt--taaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattc |
198 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
87293 |
gttaattgtttaaaatcagaatttttggactttaaaaaaaataattcctgttacaatttctaattatacaaattaacagagcaccattggtacgacattc |
87392 |
T |
|
| Q |
199 |
atcacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| |
|
|
| T |
87393 |
atcacatttcgaactctatgaaaatctactcagacat |
87429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 96887 - 97123
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
96887 |
tgtatttcaaaatcaattcctaaacattctacggtcagatacaggtatcactctttcgatatgaaaccggtatcactgtatttcaactttcattgtaaag |
96986 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttt--taaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattc |
198 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
96987 |
gttaattgtttaaaatcagaatttttggactttaaaaaaaataattcctgttacaatttctaattatacaaattaacagagcaccattggtacgacattc |
97086 |
T |
|
| Q |
199 |
atcacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| |
|
|
| T |
97087 |
atcacatttcgaactctatgaaaatctactcagacat |
97123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 28386976 - 28386735
Alignment:
| Q |
5 |
tttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgtta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
28386976 |
tttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactctatttcaactttcattgtaaatgtta |
28386877 |
T |
|
| Q |
105 |
attg-ttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcac |
203 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
28386876 |
attaatttaaaatcagaatttttagacttttaaaaatatttcctgttacaatttctaatcatacaaattaacagggcatcattggtgcgacattcatcat |
28386777 |
T |
|
| Q |
204 |
attccggactctatgaaaatctactcagacataactaaatta |
245 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
28386776 |
attccggactcaatggaaatctactcagacataattaaatta |
28386735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 23689602 - 23689446
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||| || || | |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||| | |||| |
|
|
| T |
23689602 |
tgtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcgatatgaaaccggtgtcactttatttcagctttcgctgaaaat |
23689503 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttct |
159 |
Q |
| |
|
|| | || |||||||||||||| |||| ||||||||||||| ||||||||||||| |
|
|
| T |
23689502 |
atttagctttaaaaatcagaattttcagac--ttaaaaataattcatgttacaatttct |
23689446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 35810 - 36039
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
35810 |
tgtatttcaaaaccaattcctaaaaattctacagtcagatacaagtttcgctctttcgatatgaaaccggtatcactttatttcaactttgattgtaaat |
35909 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
35910 |
attaattgtttaaaatcagaatttttagac-tttaaaaataattcctgttacaatttctaatcatgtaaattaacagagcaccattagtacaacattcat |
36008 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcag |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
36009 |
cacattccggactctatggaaatctactcag |
36039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 46 - 235
Target Start/End: Original strand, 28133 - 28321
Alignment:
| Q |
46 |
tttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattc |
145 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||| || || ||| ||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
28133 |
tttcgctctttcgatatgaaaccggtatcactttatttcaactttcattgttaacattatttgtttaaaatttgaatttttagacttt-aaaaataattc |
28231 |
T |
|
| Q |
146 |
ctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28232 |
ctgttacaatttctaatcatacaaattaatagagcaccattggtacaacagtcatcacattccagactctatgaaaatctactcagacat |
28321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38335 - 38567
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
38335 |
tgtatttcaaaatcaattcctaaaaattctacgttcagatacaggtttcactctttcgatatgaaaccggtatcactttatttcaactttcaccgtaaat |
38434 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
||||| ||| |||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||| ||||||||| | |||||||||||| ||||| |
|
|
| T |
38435 |
attaatcgttaaaaatcagaattttcagac--ttaaaaacaattcctgttacaatttctaaacatacaacttaacagagtatcattggtacgacgttcat |
38532 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||| |
|
|
| T |
38533 |
catattccggactctatagaaatctactcagacat |
38567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 76190 - 76422
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
76190 |
tgtatttcaaaatcaattcctaaaaattctacagtcagatacaggtttcactctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaat |
76289 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|| || ||| |||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
76290 |
attcatcgttaaaaatcagaattttcagac--ttaaaaacaattcctgttgcaatttataatcatacaatttaacagagtaccattggtacgacattcat |
76387 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|| ||||| ||| ||||| |||||||||||||||| |
|
|
| T |
76388 |
catattccagaccctatggaaatctactcagacat |
76422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 87915 - 88147
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
87915 |
tgtatttcaaaatcaattcctaaaaattctacagtcagatacaggtttcactctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaat |
88014 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|| || ||| |||| ||||||||| |||| ||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
88015 |
attcatcgttaaaaaccagaattttcagac--ttaaaaacaattcctgttacaatttataatcatacaatttaacagagtaccattggtacgacattcat |
88112 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| |||| |
|
|
| T |
88113 |
cacattccagaccctatggaaatctactcacacat |
88147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 15941944 - 15941714
Alignment:
| Q |
3 |
tatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| | |
|
|
| T |
15941944 |
tatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaatat |
15941845 |
T |
|
| Q |
103 |
taattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatca |
202 |
Q |
| |
|
| || ||| |||||||||||||| |||| ||||||| ||||| ||||||||||||||| ||||||| ||||||||| | ||| |||||||| ||| ||| |
|
|
| T |
15941844 |
tcatcgttaaaaatcagaattttcagac--ttaaaaacaattcatgttacaatttctaaacatacaacttaacagagtatcatcggtacgacgttcgtca |
15941747 |
T |
|
| Q |
203 |
cattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
15941746 |
cattccggactctataaaaatctactcagacat |
15941714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 15933601 - 15933371
Alignment:
| Q |
3 |
tatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| | |
|
|
| T |
15933601 |
tatttcaaaatcaattcctaaaaattctacgatcagatacaggtttcactctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaatat |
15933502 |
T |
|
| Q |
103 |
taattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatca |
202 |
Q |
| |
|
| || ||| |||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||| ||||||||| | ||| |||||||| ||| ||| |
|
|
| T |
15933501 |
tcatcgttaaaaatcagaattttcagac--ttaaaaacaattcctgttacaatttctaaacatacaacttaacagagtatcatcggtacgacgttcgtca |
15933404 |
T |
|
| Q |
203 |
cattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |
|
|
| T |
15933403 |
cattccggactctataaaaatctacgcagacat |
15933371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7159647 - 7159415
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
7159647 |
tgtatttcaaaatcaattcctaaaaattatactgtcatacacaggtttcactctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaat |
7159548 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|| || ||| |||||||||||||| |||| ||||||| ||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
7159547 |
attcatcgttaaaaatcagaattttcagac--ttaaaaacaattcttgttacaatttataatcatacaatttaacagagtaccattggtacgacattcat |
7159450 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
||||||||| ||| |||| ||||||||||| |||| |
|
|
| T |
7159449 |
cacattccgaactatatggaaatctactcaaacat |
7159415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 22074565 - 22074494
Alignment:
| Q |
163 |
catacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||||| ||||| |||||| | |||||||||| |||||| |
|
|
| T |
22074565 |
catacaaattaaaagagtaccattggtacgacaatcatcatattcccgactctgt-aaaatctacttagacat |
22074494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12483 - 12251
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
12483 |
tgtattttaaaatcaattcctaaaaattttactttcatatacagttttcactctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaat |
12384 |
T |
|
| Q |
101 |
gttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcat |
200 |
Q |
| |
|
|| |||||| |||||||||||||| |||| ||||| | ||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||| |
|
|
| T |
12383 |
attcattgttaaaaatcagaattttcagac--ttaaatacaattcctgttacaatttataatcatacaatttaacagagtactattggtacgacattcat |
12286 |
T |
|
| Q |
201 |
cacattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| |
|
|
| T |
12285 |
cacattccggaccctatggaaatctactcagacat |
12251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 7960449 - 7960219
Alignment:
| Q |
3 |
tatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaactttcatcgtaaatgt |
102 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| | |
|
|
| T |
7960449 |
tatttcaaaaccaatttctaaattttctatagttagatacaggtttcactctttcgatatgaaaccggtatcgctttatttcaactttcgctgtaaatat |
7960350 |
T |
|
| Q |
103 |
taattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatca |
202 |
Q |
| |
|
|||| ||| |||||||||||||| |||| ||||||| |||| |||||| ||||||||| ||||||| ||||||||| | |||||||||||| ||||||| |
|
|
| T |
7960349 |
taatcgttaaaaatcagaattttcagac--ttaaaaacaatttctgttaaaatttctaaacatacaacttaacagagtatcattggtacgacgttcatca |
7960252 |
T |
|
| Q |
203 |
cattccggactctatgaaaatctactcagacat |
235 |
Q |
| |
|
|||||||||||||| | || ||||||||||| |
|
|
| T |
7960251 |
tattccggactctatagagatatactcagacat |
7960219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 116965 - 116879
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaac |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
116965 |
tgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaaccggtatcactgtatttcaac |
116879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0513 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5969 - 5931
Alignment:
| Q |
1 |
tgtatttcaaaatcaattcctaaaaattctacggtcaga |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5969 |
tgtatttcaaaatcaattcctaaaaattctacggtcaga |
5931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 5227 - 5329
Alignment:
| Q |
133 |
ttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcaga |
232 |
Q |
| |
|
||||| ||||||| | ||||| ||||||||||||||| |||||||| | ||||| || || ||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
5227 |
ttaaatataattcattttacagtttctaatcatacaacttaacagaatatcattgatagaacgttcatcatattccaaactctataaaaatctactcaga |
5326 |
T |
|
| Q |
233 |
cat |
235 |
Q |
| |
|
||| |
|
|
| T |
5327 |
cat |
5329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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