View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_22 (Length: 360)
Name: NF18481_low_22
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 4133015 - 4132685
Alignment:
| Q |
19 |
gcttccagatttgtggaattagcaacaagggatatacaagaaattggaaatgcatcttggtgttatctgtgtggagtgtaattcaaaggtcgctataaag |
118 |
Q |
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| T |
4133015 |
gcttccagatttgtggaattagcaacaagggatatacaagaaattggaaatgcatcttggtgttatctgtgtggagtgtaattcaaaggtcgctataaag |
4132916 |
T |
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| Q |
119 |
ttttggtgtgtataactatgctattttgcggtcttgtattctggcgcagcacgttgatgtctttctcagcagagtgcagaaacgattgggaatatttgtg |
218 |
Q |
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| T |
4132915 |
ttttggtgtgtataactatgctattttgcggtcttgtattttggcgcagcatgttgatgtctttctcagcagagtgcagaaacgattgggaatatttgtg |
4132816 |
T |
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| Q |
219 |
ctctgactattggattatttctctttatggagggtgtgactttgagccaatagttctcaaacttcaatgaatgtgattcgtgagaattggaagtagctag |
318 |
Q |
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| T |
4132815 |
ctctgactattggattatttctctttatggagggtgtgactttgagccaatagttctcaaacttcaatgaatgtgattcgtgagaattggaagtagctag |
4132716 |
T |
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| Q |
319 |
cttttcattttgtgattgtagttcgttctgt |
349 |
Q |
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| T |
4132715 |
cttttcattttgcgattgtagttcgttctgt |
4132685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 43142144 - 43142220
Alignment:
| Q |
48 |
ggatatacaagaaattggaaatgcatcttggtgttatctgtgtggagtgtaattcaaaggtcgctataaagttttgg |
124 |
Q |
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| T |
43142144 |
ggatatacaagaaattggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttgg |
43142220 |
T |
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