View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_25 (Length: 341)
Name: NF18481_low_25
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 31688813 - 31688503
Alignment:
| Q |
18 |
attttacacgtaaaaaatagtccnnnnnnn-cctttacttttccattaaccttatccattttatatctactattcatcttcaatattgtctccaaatttt |
116 |
Q |
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| T |
31688813 |
attttacacgtaaaaaatagtccttttttttcctttacttttccattaaccttatccattttatatctactattcatcttcaatattgtctccaaatttt |
31688714 |
T |
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| Q |
117 |
taacagggatgtagcagttaaaataaattgaaatagataaatcaataagcaaaaaatagtagttgaaaagttggatatatatggactaaatttttaactc |
216 |
Q |
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| T |
31688713 |
taagagggatgtagcagttaaaataaattgaaatagataaatcaataagcaaaaa-tagtagttgaaaagttggatatatatggactaaatttttaactc |
31688615 |
T |
|
| Q |
217 |
aactatgatttttgcttatatttcatttcaaatgaagtattacatagtttcatgacgaaaaatataggacaatttgctgaaacttagtgcaacaatggct |
316 |
Q |
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| T |
31688614 |
aactatgaattttgcttatatttcatttcaaatgaagtattacatagtttcatgacgaaaaaaataggacaatttgctgaaacttagtgcaacaatggct |
31688515 |
T |
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| Q |
317 |
tatttgagtttc |
328 |
Q |
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|||||||||||| |
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| T |
31688514 |
tatttgagtttc |
31688503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 12559055 - 12559005
Alignment:
| Q |
161 |
ataagcaaaaaatagtagttgaaaagttggatatatatggactaaatttttaa |
213 |
Q |
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|||||||||||| ||||||||||||||| || |||||||||||||||||||| |
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| T |
12559055 |
ataagcaaaaaag-gtagttgaaaagttg-atgtatatggactaaatttttaa |
12559005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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