View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_27 (Length: 336)
Name: NF18481_low_27
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 4543991 - 4544186
Alignment:
| Q |
18 |
cagattactcaaaagtcccttagatttaacggatcgtaatttccaatgaaataaaatttatcagagttacgatccaatcgttgtttttgtattaactccc |
117 |
Q |
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| T |
4543991 |
cagattactcaaaagtccctcagatttaacggatcgtaatttccaatgaaataaaatttatcagagttacgatccaatcgttgtttttgtattaactccc |
4544090 |
T |
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| Q |
118 |
aatcgacttatttaagaggtcgaacaatgcataagaaggtgaattgtcacatgtattttacttttactacatagnnnnnnncatgattttggacac |
213 |
Q |
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| T |
4544091 |
aatcgacttatttaagaggtcgaacaatgcataagaaggtgaattgtcacatgtattttacttttactacatagaaaaaaacatgattttggacac |
4544186 |
T |
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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 4544215 - 4544308
Alignment:
| Q |
233 |
attaaactgtgaaaaataaggttaatgttttgtcgtgcacacgagcataggttggtacttacgatttttgcgtgcttgtccttgctggtactct |
326 |
Q |
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| T |
4544215 |
attaaactgtgaaaaataaggttaatgttttgtcgtgcacacgagcataggttggtacttacgattttttcgtgcttgtccttgctggtactct |
4544308 |
T |
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