View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_31 (Length: 312)
Name: NF18481_low_31
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 13940454 - 13940157
Alignment:
| Q |
1 |
tatctagatcgaaccttatttaatatgtgacttttaatacatccatcatccacggcctccaacatgatctgagtgcccatatagtggtgatgaactaaaa |
100 |
Q |
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| T |
13940454 |
tatctagatcgaatcttatttaatatgtgactcttaatacagccatcatccacggcctccaacatgatctgagtgcccatatagtggtgatgaactaaaa |
13940355 |
T |
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| Q |
101 |
tacgctatgataccatcttagaaagctcatgaatttcaagcagagacggatgtactccttgtggattgggggcaactgcctaaatc----nnnnnnnaac |
196 |
Q |
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| T |
13940354 |
tacgctatgataccatcttagaaatctcatgaattccaagcagagacggatgtactccttgtggattgggggcaactgcctaaatctatttttttttaac |
13940255 |
T |
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| Q |
197 |
taattaggcttaatcttatattatgcaaacatttctttcttgtgggatattataagtttaaagaagacacacaatatgacccttgatgaattaagagg |
294 |
Q |
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| T |
13940254 |
taattaggcttaatcttatattatgcaaacatttctttcttgtgggatattataagtttaaagaagactcacaatatgacccttgatgaattaagagg |
13940157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 4047747 - 4048040
Alignment:
| Q |
1 |
tatctagatcgaaccttatttaatatgtgacttttaatacatccatcatccacggcctccaacatgatctgagtgcccatatagtggtgatgaactaaaa |
100 |
Q |
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| T |
4047747 |
tatctagatcaaatcttatttaatatgtgactcttaatacatccatcatccacggcctccaacatgatctgagtgcccatatagtggtgatgaactaaaa |
4047846 |
T |
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| Q |
101 |
tacgctatgataccatcttagaaagctcatgaatttcaagcagagacggatgtactccttgtggattgggggcaactgcctaaatcnnnnnnnaactaat |
200 |
Q |
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| T |
4047847 |
tacgctatgataccatcttagcaatctcataaattctaagcagagacggatgtaatccttgtggattgggggcaactgcctaagtctttttataactaat |
4047946 |
T |
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| Q |
201 |
taggcttaatcttatattatgcaaacatttctttcttgtgggatattataagtttaaagaagacacacaatatgacccttgatgaattaagagg |
294 |
Q |
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| T |
4047947 |
taggcttaatcttatattatgcaaacatttctttcttgttggatattataagtttaaagaagacacacaatatgacccttgatgaattaagagg |
4048040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 4086840 - 4086927
Alignment:
| Q |
208 |
aatcttatattatgcaaacatttctttcttgtgggatatta-taagtttaaagaagacacacaatatgacccttgatgaattaagagg |
294 |
Q |
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| T |
4086840 |
aatcttatagtatgaacacattcctttcttgtgatatattaataagtttaaagaagacacaccatttgaccttggacaaattaagagg |
4086927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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