View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_32 (Length: 308)
Name: NF18481_low_32
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 35622224 - 35621937
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622224 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtcgagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
35622125 |
T |
|
| Q |
101 |
tgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622124 |
tgttgatgatgataacattaacctagcttcaagtttaccaaaaccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
35622025 |
T |
|
| Q |
201 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactag |
288 |
Q |
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| T |
35622024 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactag |
35621937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 34263306 - 34263016
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| | |||| |||||| | ||||| |||| ||||||| |
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| T |
34263306 |
ttgcttatttcttcgttactgagtcgccaaggtggcttattatgcaaggtcgagagaaagaaattataaaaaggctcaaaagagttttatcaaaagaaag |
34263207 |
T |
|
| Q |
101 |
tgttgatgatgat---aacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaa |
197 |
Q |
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||||||||||||| |||| ||| |||| ||| ||||||||||| || ||| |||||||||| || |||||||| ||||||||||||||||||| || |
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| T |
34263206 |
tgttgatgatgatgataacactaatctaggttcgagtttaccaaaaccacccacaaaagaaaaggttacaatttttcaacattactcttcaataggtgaa |
34263107 |
T |
|
| Q |
198 |
ttgtttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactag |
288 |
Q |
| |
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||| ||||||||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
34263106 |
ttgattcataaaagatgggctcttataagaataatagctgttatgattcttggaattggaattggaatggtttatcttggtatgccactag |
34263016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 14580095 - 14579808
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| || |||||||| |
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| T |
14580095 |
ttgcttatctctttgttaccgagtcgcctaggtggcttgttatgcaaggtcgagagaaagaaattttgaaaatgctcaaaagggtttcttctgaagaaag |
14579996 |
T |
|
| Q |
101 |
tgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
200 |
Q |
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|| |||||||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| |||| |
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| T |
14579995 |
tgccgatgatgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaatta |
14579896 |
T |
|
| Q |
201 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactag |
288 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||| |
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| T |
14579895 |
tttcataaaagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttattttggtatgccactag |
14579808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 14543492 - 14543779
Alignment:
| Q |
1 |
ttgcttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaaattctgaaaatgctcaataaagtttcatcagaagaaag |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| || |||||||| |
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| T |
14543492 |
ttgcttatctctttgttaccgagtcgcctaggtggcttgttatgcaaggtcgagagaaagaaattttgaaaatgctcaaaagggtttcttctgaagaaag |
14543591 |
T |
|
| Q |
101 |
tgttgatgatgataacattaacctagcttcaagtttaccaaagccgcccgcaaaagaaaaaatttcaatttttaaacattactcttcaataggaaaattg |
200 |
Q |
| |
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|| |||||||||| | ||||| ||||||| | ||||||||| | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||||| |||| |
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| T |
14543592 |
tgccgatgatgatagcgttaacttagcttcgaatttaccaaaacttcccccaaaagaaaaagtttcattttttcaactttactcatcaataggagaatta |
14543691 |
T |
|
| Q |
201 |
tttcataaaaaatgggctcttataagaatgatagctgttatgattcttagtattggaattggaatggtttattatggtatgccactag |
288 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||| |
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| T |
14543692 |
tttcataaaagatgggctgttataagaatgatagctgttatgattcttggaattggacttggaatggtttatttaggtatgccactag |
14543779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 10404724 - 10404772
Alignment:
| Q |
238 |
ttatgattcttagtattggaattggaatggtttattatggtatgccact |
286 |
Q |
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||||| ||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
10404724 |
ttatggttcttggtatgggaattggaatggtttattttggtatgccact |
10404772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 10404503 - 10404560
Alignment:
| Q |
5 |
ttatttcttcgttaccgagtcgccaaggtggcttgttatgcaaggtagagagaaagaa |
62 |
Q |
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||||||||| ||||||||||| ||||| |||||| | |||||||||||| | |||||| |
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| T |
10404503 |
ttatttctttgttaccgagtctccaagatggcttctaatgcaaggtagaaacaaagaa |
10404560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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