View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_34 (Length: 282)
Name: NF18481_low_34
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_34 |
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| [»] scaffold0308 (1 HSPs) |
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| [»] scaffold0654 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 12002277 - 12002533
Alignment:
| Q |
9 |
gaagaatattagggtgtgtggtaatccatagcatattgggtttgtatggcttgcggatgaagaaagtagacgatattgatgcttactgtttcttgcttac |
108 |
Q |
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| T |
12002277 |
gaagtatattagggtgtgtggtaatccatagcatattgggtttgtatggcttgcggatgaagaaagtagacgatattgatgcttactgtttctttcttac |
12002376 |
T |
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| Q |
109 |
tgacatagtttaaactttgatgatggctatacgaggggatgga-tttctgttaaggaatggtaagaaaaggttaagtgtgatagtggctgatagcctgca |
207 |
Q |
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| T |
12002377 |
tgacatagtttaaactttgatgatggctatatgaggggatggattttctgttaaggaatggtaagaaaaggttaagtgtgatagtggctgatagcctgca |
12002476 |
T |
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| Q |
208 |
gtgaatgaattggtgtctagtggaaggttagaatagataaattttctaggagagttg |
264 |
Q |
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| T |
12002477 |
gtgaatgaattggtgtctagtggaaggttagaatagataaattttctaggagagttg |
12002533 |
T |
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Target: scaffold0308 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 10494 - 10533
Alignment:
| Q |
153 |
ttctgttaaggaatggtaagaaaaggttaagtgtgatagt |
192 |
Q |
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| T |
10494 |
ttctgttcaggaatggtaagaaaaggttaagtgtgatagt |
10533 |
T |
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Target: scaffold0654 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 147 - 98
Alignment:
| Q |
148 |
tggatttctgttaaggaatggtaagaaaaggttaagtgtgatagtggctg |
197 |
Q |
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| T |
147 |
tggatttctgttcaggaatggtaagcaaaggttaagtgtgttagttgctg |
98 |
T |
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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 119229 - 119181
Alignment:
| Q |
142 |
aggggatggatttctgttaaggaatggtaagaaaaggttaagtgtgata |
190 |
Q |
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| T |
119229 |
aggggatagatttctgttatggagtggtaagcaaaggttaagtgtgata |
119181 |
T |
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