View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_36 (Length: 266)
Name: NF18481_low_36
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 4047659 - 4047406
Alignment:
| Q |
1 |
tcatggaaaaaatatttgaaagtgaaatgaacaaaacaacccttaaaaataatcagatttgttattaaacttcactaattataagatttgaattctgtta |
100 |
Q |
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| T |
4047659 |
tcatggaaaaaatatttgaaagtgaaatgaacaaaacaacccttaaaaataatcagatttgttattaaacttcactaattataagatttgaattctgtta |
4047560 |
T |
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| Q |
101 |
ttaaaattcatagcctacaaaacaagtttaccacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatgccgacac |
200 |
Q |
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| T |
4047559 |
ttaaaattcatagcctacaaaacaagtttacgacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatgccgacac |
4047460 |
T |
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| Q |
201 |
aattagtttttggaataaactcatcacaattatatgagttaagtcccatttctg |
254 |
Q |
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| T |
4047459 |
aattagtttttggaataaactcatcacaattatatgagttaagtcccatttctg |
4047406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 4073856 - 4073607
Alignment:
| Q |
6 |
gaaaaaatatttgaaagtgaaatgaacaaaacaacccttaaaa-ataatcagatttgttattaaacttcactaattat---aagatttgaattctgttat |
101 |
Q |
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| T |
4073856 |
gaaaaaatatttgacagtgaaatgaacaaaacaacccttaaaagagaatcagatttgttattaaacttcactaattatgtcaagatttcaaatctgttat |
4073757 |
T |
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| Q |
102 |
taaaattcatagcctacaaaacaagtttaccacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatgccgacaca |
201 |
Q |
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| T |
4073756 |
taaaattcatagcctacaaaacaagtttaccacttgtctacttagtggggatttatgtgtggttgtctcggattcttgaatttttcatgatgccgacaca |
4073657 |
T |
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| Q |
202 |
attagtttttggaataaactcatcacaattatatgagttaagtcccattt |
251 |
Q |
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| T |
4073656 |
attagtttttggaataaactcatcacaattatataagttaggtcccattt |
4073607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 13940548 - 13940797
Alignment:
| Q |
7 |
aaaaaatatttgaaagtgaaatgaacaaaacaacccttaaaaataatcagatttgttattaaacttcactaattataagatttgaattctgttattaaaa |
106 |
Q |
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| T |
13940548 |
aaaaaaaatttgaaagtgaaatgaacaaatcaacccttaaaaataatcagatttgttattaaacttcactaattataagatttgaattctgttattaaaa |
13940647 |
T |
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| Q |
107 |
ttcatagcctacaaaacaagtttaccacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatg-----ccgacaca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13940648 |
ttcatagcctacaaaacaagtttaccacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatgccgacccgacaca |
13940747 |
T |
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| Q |
202 |
attagtttttggaataaactcatcacaattatatgagttaagtcccattt |
251 |
Q |
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| T |
13940748 |
attagtttttggaataaactcatcacaattatatgagttaggtcccattt |
13940797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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