View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18481_low_38 (Length: 259)

Name: NF18481_low_38
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18481_low_38
NF18481_low_38
[»] chr6 (2 HSPs)
chr6 (24-160)||(4460236-4460372)
chr6 (19-164)||(17993442-17993587)
[»] chr4 (6 HSPs)
chr4 (24-160)||(53791155-53791291)
chr4 (21-155)||(44769853-44769989)
chr4 (27-110)||(11392771-11392854)
chr4 (27-110)||(11402498-11402581)
chr4 (27-119)||(2436238-2436330)
chr4 (51-110)||(48830615-48830674)
[»] chr3 (2 HSPs)
chr3 (24-155)||(22489734-22489865)
chr3 (79-111)||(19884717-19884749)
[»] chr2 (1 HSPs)
chr2 (24-160)||(7395555-7395691)
[»] chr1 (1 HSPs)
chr1 (24-160)||(45529506-45529642)
[»] chr8 (1 HSPs)
chr8 (159-250)||(26023616-26023706)
[»] chr7 (1 HSPs)
chr7 (25-104)||(15568864-15568943)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 4460372 - 4460236
Alignment:
Q  24 acctgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 123  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  4460372 acctgtttggtacagcggtgtagtagcattttccacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcg 4460273  T
Q  124 ttttttcctatttccaccggtacaacaaacacatact 160  Q
    |||||||||||||| ||||||||||||||||||||||    
T  4460272 ttttttcctatttctaccggtacaacaaacacatact 4460236  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 17993442 - 17993587
Alignment:
Q  19 ttagtacctgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaa 118  Q
    |||||||||||||||||||||| || | ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||    
T  17993442 ttagtacctgtttggtacagcgatgtattagcattttccgcgtcccaaggcgttttgaacgtgaaaataaagaagctaccttttgaagcttttgtgcaaa 17993541  T
Q  119 cggcattttttcctatttccaccggtacaacaaacacatacttaat 164  Q
    |||| |||||| |||||||||||| |||||||||||| | ||||||    
T  17993542 cggcgtttttttctatttccaccgctacaacaaacacgttcttaat 17993587  T

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Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 53791155 - 53791291
Alignment:
Q  24 acctgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 123  Q
    |||||||||||||||||||| | ||||||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||     
T  53791155 acctgtttggtacagcggtgtattagcattttccacgtcccgaggcattttgaaagtgaaaataaagaagctaccatttgtagcttttgtgcaaacggcg 53791254  T
Q  124 ttttttcctatttccaccggtacaacaaacacatact 160  Q
    |||||| ||||||||||||  ||||||||||| ||||    
T  53791255 tttttttctatttccaccgccacaacaaacacgtact 53791291  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 44769989 - 44769853
Alignment:
Q  21 agtacctgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacg 120  Q
    ||||||||||||||||| ||||| | ||||||||| ||||| || || ||||||||||||||||||||||||| |||||||||||||||||||  |||||    
T  44769989 agtacctgtttggtacaacggtgtattagcattttccacgttccgagacattttgaacgtgaaaataaagaagttaccttttgtagcttttgtacaaacg 44769890  T
Q  121 --gcattttttcctatttccaccggtacaacaaacac 155  Q
      |  |||||| |||||||||||| ||||||||||||    
T  44769889 ccgtttttttttctatttccaccgctacaacaaacac 44769853  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 11392771 - 11392854
Alignment:
Q  27 tgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttt 110  Q
    ||||||| | ||||||||| | ||||||||| ||||||||| ||  |  ||||||||||| |||||||||| ||||||||||||    
T  11392771 tgtttggaatagcggtggatttgcatttttcgcgtcccaagacagatataacgtgaaaatgaagaagctacattttgtagcttt 11392854  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 11402498 - 11402581
Alignment:
Q  27 tgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttt 110  Q
    ||||||| | ||||||||| | ||||||||| ||||||||| ||  |  ||||||||||| |||||||||| ||||||||||||    
T  11402498 tgtttggaatagcggtggatttgcatttttcgcgtcccaagacagatataacgtgaaaatgaagaagctacattttgtagcttt 11402581  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 2436330 - 2436238
Alignment:
Q  27 tgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaac 119  Q
    ||||||| | |||||| || |||||||||||| ||||| | |||| || ||| |||||||| ||||||||| |||||||| ||| | ||||||    
T  2436330 tgtttggaatagcggtagactagcatttttcatgtcccgaagcatatttaacttgaaaatatagaagctacattttgtaggtttagagaaaac 2436238  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 48830615 - 48830674
Alignment:
Q  51 atttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttt 110  Q
    ||||||| |||||| || | | ||||||||||||||||||||| | ||||||||||||||    
T  48830615 atttttcgcgtcccgagacttattgaacgtgaaaataaagaagttgccttttgtagcttt 48830674  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 22489865 - 22489734
Alignment:
Q  24 acctgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 123  Q
    |||||||||||||||||||| | ||||||||| | |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||     
T  22489865 acctgtttggtacagcggtgtattagcattttccgcgtcccgaggcattttgaacatgaaaataaagaagctaccttttctagcttttgtgcaaacggcg 22489766  T
Q  124 ttttttcctatttccaccggtacaacaaacac 155  Q
    |||||| ||||||||||||  |||||||||||    
T  22489765 tttttttctatttccaccgccacaacaaacac 22489734  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 19884749 - 19884717
Alignment:
Q  79 gtgaaaataaagaagctaccttttgtagctttt 111  Q
    |||||||||||||||||| ||||||||||||||    
T  19884749 gtgaaaataaagaagctaacttttgtagctttt 19884717  T

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Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 7395555 - 7395691
Alignment:
Q  24 acctgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 123  Q
    |||||||||||||||||||| | ||||||||| | | |||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||     
T  7395555 acctgtttggtacagcggtgtattagcattttccgcatcccgaggcattttgaaagtgaaaataaagaagctaccatttgtagcttttgtgcaaacggcg 7395654  T
Q  124 ttttttcctatttccaccggtacaacaaacacatact 160  Q
    |||||| ||||||||||||   |||||||||| ||||    
T  7395655 tttttttctatttccaccgccgcaacaaacacgtact 7395691  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 45529642 - 45529506
Alignment:
Q  24 acctgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgaaaacggca 123  Q
    |||||||||||||||||||| | ||||||||| | | |||| |||||||||||| |||||||||||||||||| | ||| ||||||||||| |||||||     
T  45529642 acctgtttggtacagcggtgtattagcattttccgcatcccgaggcattttgaaagtgaaaataaagaagctaacatttatagcttttgtgcaaacggcg 45529543  T
Q  124 ttttttcctatttccaccggtacaacaaacacatact 160  Q
    |||||| ||||||||||||  ||||||||||| ||||    
T  45529542 tttttttctatttccaccgccacaacaaacacgtact 45529506  T

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Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 26023616 - 26023706
Alignment:
Q  159 cttaattcaaaaacccgtgggacacgcgtgaaagctttaacatgagggttatttcggtctgtcagcaatgaatgttgcatcaatccctatgc 250  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26023616 cttaattcaaaaaaccgtggga-acgcgtgaaagctctaacatgagggtcatttcggtctgtcagcaatgaatgttgcatcaatccctatgc 26023706  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 15568943 - 15568864
Alignment:
Q  25 cctgtttggtacagcggtggagtagcatttttcacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgt 104  Q
    |||||||||||||| |||| | ||| ||||| | |||||| |||| ||||||||||||||||||||||| ||||||||||    
T  15568943 cctgtttggtacagtggtgtattagaattttccgcgtcccgaggcgttttgaacgtgaaaataaagaagttaccttttgt 15568864  T

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