View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_39 (Length: 258)
Name: NF18481_low_39
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 18090202 - 18089959
Alignment:
| Q |
1 |
ttcagttgaaggcagcaagagtacacaaacaagacacaagaacacaaaggaatatccctatgaatgagtcacgtgaatggnnnnnnn-tatatcaacatg |
99 |
Q |
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| T |
18090202 |
ttcagttgaaagcagcaagagtacacaaacaagacacaagaacacaaaggaatatccctatgaatgagtcacgtgaatggaaaaaatatatatcaacatg |
18090103 |
T |
|
| Q |
100 |
ttgaacattacttctcgtttaaggactgcattaagcatttttatgctagtttaaagctctaatagtcctaannnnnnnnnatagacgaaacgataatagt |
199 |
Q |
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| T |
18090102 |
ttgaacattacttctcgtttaaggactgcattaagcatttttatgctagtttaaagctctaatagtccta-----tttttttagacgaaacgataatagt |
18090008 |
T |
|
| Q |
200 |
cactaaaaactcacacatataaatgaattagttagggcttgaacctttg |
248 |
Q |
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|| |||||| |||| ||||||||||||||||||||||||||||| |||| |
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| T |
18090007 |
cattaaaaattcacgcatataaatgaattagttagggcttgaacttttg |
18089959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 18082511 - 18082483
Alignment:
| Q |
51 |
aatatccctatgaatgagtcacgtgaatg |
79 |
Q |
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| T |
18082511 |
aatatccctatgaatgagtcacgtgaatg |
18082483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 32105157 - 32105200
Alignment:
| Q |
180 |
atagacgaaacgataatagtcactaaaaactcacacatataaat |
223 |
Q |
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| T |
32105157 |
atagacgaaatgataatagtcattaaaaaatcacacatataaat |
32105200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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