View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_42 (Length: 249)
Name: NF18481_low_42
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 32346762 - 32346591
Alignment:
| Q |
18 |
atacatacatgtgaccttatttagtacagtagaaggatggtacacatataattatgtagatgtgatactagggcaatgatgtatatcacatcacatttat |
117 |
Q |
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| T |
32346762 |
atacatacatgtgaccttatttagtactgtagaaggatggtacacatataattatgtagatgtgatactagggcaatgatgtatatcacatcacatttat |
32346663 |
T |
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| Q |
118 |
atatagaaaaacctagccatgcgagaaag-nnnnnnnngggcgatacagagagtagatcagatccgaacatt |
188 |
Q |
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| T |
32346662 |
atatagaaaaacctagccatgcgggaaagtttttttttgagcgatacagaaagtagatcagatccgaacatt |
32346591 |
T |
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