View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_44 (Length: 234)
Name: NF18481_low_44
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_44 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 36 - 234
Target Start/End: Complemental strand, 10233978 - 10233780
Alignment:
| Q |
36 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagtt |
135 |
Q |
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| T |
10233978 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagtt |
10233879 |
T |
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| Q |
136 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgat |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10233878 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattctttgtgat |
10233780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 36 - 234
Target Start/End: Complemental strand, 8336862 - 8336664
Alignment:
| Q |
36 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagtt |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8336862 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagtt |
8336763 |
T |
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| Q |
136 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgat |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336762 |
acactttagttatcatattgcaatacttattaccttataattttttccttacagttttcaaccaacttaaattcctttcgtgttatgattcttagtgat |
8336664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 22080888 - 22080835
Alignment:
| Q |
38 |
agatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaa |
91 |
Q |
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||||||||||||| | || ||||||||||| ||||||||| | ||||||||||| |
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| T |
22080888 |
agatgtcattggaatggtccaggacatgggctactgtcaattgaatgaagggaa |
22080835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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