View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_46 (Length: 228)
Name: NF18481_low_46
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 10891585 - 10891384
Alignment:
| Q |
19 |
gagtgtcaagagtcgaagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacccattgcagtagacaaggc |
118 |
Q |
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|||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||| |
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| T |
10891585 |
gagtctcaagaattgaagacatgtgctgctcaaaatcatttggggaagggagaatattgtatcaaacaaacgtaccgatacccgttgcagtagacaaggc |
10891486 |
T |
|
| Q |
119 |
aaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttatt---gagggccattcaagagtaggtgatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |
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| T |
10891485 |
aaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctataacttttattgaggagggccattcaagagtaggtggtg |
10891386 |
T |
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| Q |
216 |
at |
217 |
Q |
| |
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|| |
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| T |
10891385 |
at |
10891384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 11157810 - 11158008
Alignment:
| Q |
19 |
gagtgtcaagagtcgaagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacccattgcagtagacaaggc |
118 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||| ||||||| ||||||||| |
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| T |
11157810 |
gagtttcaagaatcgaagacatgtgctgctcaaaatcatttggggaagggagaacattgtatcaaagaaacatactgataccgattgcagaagacaaggc |
11157909 |
T |
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| Q |
119 |
aaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttattgagggccattcaagagtaggtgatgat |
217 |
Q |
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| T |
11157910 |
aaatcactctgaacaaacggccattgattatttgtagaatgtaaatctcccgaaatatctatagcttttattgagggccattcaagagtaggtggtgat |
11158008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 11146643 - 11146840
Alignment:
| Q |
18 |
tgagtgtcaagagtcgaagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacccattgcagtagacaagg |
117 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| |
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| T |
11146643 |
tgagtctcaagaatcgaagacatgtgctgctcaaaatcatttggggaagggagaatattgtatcaaagaaatataccgataccgattgcagtagacaagg |
11146742 |
T |
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| Q |
118 |
caaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttatt---gagggccattcaagagtaggtg |
212 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||| |
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| T |
11146743 |
caaatcactctcaacaaacggccattgattatttgtagaatgtaaatctccccaaatatctatagcttttattgaggagggccattcaagagtaggtg |
11146840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 8863565 - 8863364
Alignment:
| Q |
19 |
gagtgtcaagagtcgaagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacccattgcagtagacaaggc |
118 |
Q |
| |
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||||||||||| | |||||| ||||||||||||||||||| |||||| ||||||||| ||||||| |||| || | |||||||||||||||||| ||| |
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| T |
8863565 |
gagtgtcaagaatttaagacaagtgctgctcaaaatcattttgggaagagagaatattgtatcaaaaaaacgtagtgttacccattgcagtagacatggc |
8863466 |
T |
|
| Q |
119 |
aaatcattctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttattgagg---gccattcaagagtaggtgatg |
215 |
Q |
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| ||| |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
8863465 |
gagtcactctcaacaaacggccattgagtctctgaagaatgtaaatctcccgaaatatctatttcttttattgaggagagccattcaagagtaggtggtg |
8863366 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
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|| |
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|
| T |
8863365 |
at |
8863364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 11128834 - 11129020
Alignment:
| Q |
34 |
aagacatgtgctgctcaaaatcatttggggaagggagaatattctatcaaagaaacttaccgatacccattgcagtagacaaggcaaatcattctcaaca |
133 |
Q |
| |
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|||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||| | | ||| |||||||||||||| || ||||| |||||||| |
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| T |
11128834 |
aagacaagtgctgctcaaaatcattttgggaagagagaatattgtatcaaagaaacgcagggctacacattgcagtagacatggggaatcactctcaaca |
11128933 |
T |
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| Q |
134 |
aacggccattgattatctgtagaatgtaaatctcccgaaatatctatttcttttattgagg---gccattcaagagtaggtgatgat |
217 |
Q |
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||||||||| || | |||||||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
11128934 |
aacggccatcgagtctctgtagaatctaaacttcccgaaaaatctatttcttttattgaggagagccattcaagagtaggtggtgat |
11129020 |
T |
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