View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18481_low_6 (Length: 505)

Name: NF18481_low_6
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18481_low_6
NF18481_low_6
[»] chr3 (15 HSPs)
chr3 (25-497)||(27629467-27629941)
chr3 (25-359)||(34522305-34522640)
chr3 (25-359)||(34488099-34488433)
chr3 (356-489)||(34522102-34522235)
chr3 (356-489)||(34487896-34488029)
chr3 (169-359)||(34468432-34468620)
chr3 (123-261)||(34509647-34509788)
chr3 (136-221)||(27629969-27630055)
chr3 (356-428)||(34509182-34509255)
chr3 (276-348)||(27623234-27623306)
chr3 (123-221)||(34522654-34522754)
chr3 (356-489)||(34468245-34468362)
chr3 (303-348)||(34509333-34509378)
chr3 (356-425)||(27623086-27623156)
chr3 (123-221)||(34488447-34488547)


Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 25 - 497
Target Start/End: Complemental strand, 27629941 - 27629467
Alignment:
Q  25 catatgaaggaactaagtcttggccacctccagcaccaatat--ggtgcaggtgctggcggtggccatgttgtagtttctccaaatggtggaagactgat 122  Q
    ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27629941 catatgaaggaactaagtcttggccacctccagcatcaatatatggtgcaggtgctggcggtggccatgttgtagtttctccatatggtggaagactgat 27629842  T
Q  123 gtaaccagcaccgagctgcatcaagcaacctaagttccatctacagcctatgaagttttcgtgtctcctccacctctccccaatctgaggcaagttcatt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27629841 gtaaccagcaccgagctggatcaagcaacctaagttccatctacagcctatgaagttttcgtgtctcctccacctctccccaatctgaggcaagttcatt 27629742  T
Q  223 ttcccagccaccagaggtgtctgaagttgaacaggatctaggacaaatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatca 322  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27629741 ttcccagccaccagaggtgtctgaagttgaacagaatctaggacaaatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatca 27629642  T
Q  323 ctgaggtttccccttctccttggaaagggcagctatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatactta 422  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27629641 ttgaggtttccccttctccttggaaagggcagctatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatactta 27629542  T
Q  423 ttgctagtatttctactcttggttgcgtaggtaacaattactccagaagtgacttatagaggtgtgatctgtgct 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27629541 ttgctagtatttctactcttggttgcgtaggtaacaattactccagaagtgacttatagaggtgtgatctgtgct 27629467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 25 - 359
Target Start/End: Complemental strand, 34522640 - 34522305
Alignment:
Q  25 catatgaaggaactaagtcttggccacctccagcaccaatatggtgcaggtgctggcggtggccatgttgtagtttctccaaatggtggaagactgatgt 124  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  34522640 catatgaaggaactacgtcttggccacctccaacaccaatatggtgcaggtgctggcggtggccatgttgtagtttcttcatatggtggcagactgatgt 34522541  T
Q  125 aaccagcaccgagctgcatcaagcaacctaagttccatctacagcctatgaagttttcgtgtctcctccacctctccccaatctgaggcaagttcatttt 224  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34522540 aaccagcaccgagctgcatcaagcaacctcagttccatctacatcctatcaagttttcgtgtctccttcacctctccccaatctgaggcaagttcatttt 34522441  T
Q  225 cccagccaccagaggtgtctgaagttgaacaggatctaggacaaatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcac- 323  Q
    |||| | |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  34522440 cccaactaccagaggtgtctgaagttgaacaagatctaggacaaatgacatttcattcttaagagacgcatgcctcttctccacaaagtaaatcatcact 34522341  T
Q  324 tgaggtttccccttctccttggaaagggcagctatg 359  Q
    |  ||||||  ||||||||||||||||| |||||||    
T  34522340 ttgggtttcttcttctccttggaaaggggagctatg 34522305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 25 - 359
Target Start/End: Complemental strand, 34488433 - 34488099
Alignment:
Q  25 catatgaaggaactaagtcttggccacctccagcaccaatatggtgcaggtgctggcggtggccatgttgtagtttctccaaatggtggaagactgatgt 124  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| || |||| || ||||||||||    
T  34488433 catatgaaggaactacgccttggccacctccagcactaatatggtgcaggtgctggctgtgtccatgttgtagtttcttcatatggcggcagactgatgt 34488334  T
Q  125 aaccagcaccgagctgcatcaagcaacctaagttccatctacagcctatgaagttttcgtgtctcctccacctctccccaatctgaggcaagttcatttt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34488333 aaccagcaccgagctgcatcaagcaacctaagttccatctacagcctatcaagttttcgtgtctcctccacctctccccaatctgaggcaagttcatttt 34488234  T
Q  225 cccagccaccagaggtgtctgaagttgaacaggatctaggacaaatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcact 324  Q
     |||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| | ||     
T  34488233 accagccaccagaggtgactgaagttgaatagaatctaggacaaatgacatttcattcttaagagacgcatgcctcttctccacaacgtaaatctttacc 34488134  T
Q  325 gaggtttccccttctccttggaaagggcagctatg 359  Q
    ||||||||||||||| |||||||||||||||||||    
T  34488133 gaggtttccccttcttcttggaaagggcagctatg 34488099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 356 - 489
Target Start/End: Complemental strand, 34522235 - 34522102
Alignment:
Q  356 tatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatacttattgctagtatttctactcttggttgcgtaggta 455  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34522235 tatgatgtaagttccactttcaatgatttgtataattacttactgtttatccttttaattatacttattgctagtatttctgctcttggttgcgtaggta 34522136  T
Q  456 acaattactccagaagtgacttatagaggtgtga 489  Q
    |||||||||||||||| ||| | |||||||||||    
T  34522135 acaattactccagaagagacgtctagaggtgtga 34522102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 356 - 489
Target Start/End: Complemental strand, 34488029 - 34487896
Alignment:
Q  356 tatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatacttattgctagtatttctactcttggttgcgtaggta 455  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  34488029 tatgatgtaagttccactttcaatgatttgtataattacttactgtttatccttttaattatacttattgctagtatttcttctcttggttgtgtaggta 34487930  T
Q  456 acaattactccagaagtgacttatagaggtgtga 489  Q
    |||||||||||| ||| ||||| |||||||||||    
T  34487929 acaattactccataagcgacttctagaggtgtga 34487896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 169 - 359
Target Start/End: Complemental strand, 34468620 - 34468432
Alignment:
Q  169 cctatgaagttttcgtgtctcctccacct-ctccccaatctgaggcaagttcattttcccagccaccagaggtgtctgaagttgaacaggatctaggaca 267  Q
    ||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  34468620 cctatcaagatttggtgtctcctccacctgctccccaatctgaggcaagttcattt-cccagccacaagaggtgtctgaagttgaacaggatctgggaca 34468522  T
Q  268 aatggcatttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcactgaggtttccccttctccttggaaagggcagctatg 359  Q
    |||| |||||||||||   ||||| |||  | || ||||||||||||||||||| | || ||||||| ||| |   |||||||| |||||||    
T  34468521 aatgacatttcattct--ggagactcattcccctcctccacaaagtaaatcatcgccgacgtttccctttcgctccggaaaggggagctatg 34468432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 261
Target Start/End: Complemental strand, 34509788 - 34509647
Alignment:
Q  123 gtaaccagca-ccgagctgcatcaagcaacctaagttccatctacagcctatgaagttttcgtgtctcctccacc-tctccccaatctgaggcaagttca 220  Q
    |||||||||| |||||||||| ||||| |||| ||||||||||||| || || ||||||| |||||||||||||| |||| ||||||| ||||||| ||     
T  34509788 gtaaccagcatccgagctgcaccaagctacctcagttccatctacacccgatcaagttttggtgtctcctccaccttctctccaatcttaggcaagctcg 34509689  T
Q  221 ttttcccagccacca-gaggtgtctgaagttgaacaggatct 261  Q
    | ||||||  ||||| || |||||||||||| |||| |||||    
T  34509688 tcttcccattcaccatgaagtgtctgaagtttaacaagatct 34509647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 27629969 - 27630055
Alignment:
Q  136 agctgcatcaagcaacctaagttccatctacagcctatgaagttttcgtgtctcctccacct-ctccccaatctgaggcaagttcat 221  Q
    ||||||||||||||||||||||||||||| || ||||   |||||||||||||||||||||| ||| |||||| ||| |||||||||    
T  27629969 agctgcatcaagcaacctaagttccatctgcaccctaaccagttttcgtgtctcctccacctgctctccaatccgagacaagttcat 27630055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 34509255 - 34509182
Alignment:
Q  356 tatgatgtaagttccactttcaataatttgta-taattacttactgtttatccttttaattatacttattgcta 428  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||| || ||||||| |||||||    
T  34509255 tatgatgtaagttccactttcaatgatttgtagtaatttcttactttttatccttatatttatactaattgcta 34509182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 27623306 - 27623234
Alignment:
Q  276 ttcattcttaagagacgcatgtctcttctccacaaagtaaatcatcactgaggtttccccttctccttggaaa 348  Q
    |||||||||| | ||| |||| | || |||||||||||||||||||||| |||||||||||| ||||||||||    
T  27623306 ttcattcttaggggactcatgcccctcctccacaaagtaaatcatcactaaggtttccccttatccttggaaa 27623234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 34522654 - 34522754
Alignment:
Q  123 gtaaccagcacc-gagctgcatcaagcaacctaagttccatctacagcctatgaagttttcgtgtctcctccacct-ctccccaatctgaggcaagttca 220  Q
    ||||||| |||| |||||||||||||||||||||||| ||||| |  ||||   |||||||||||||||||||||| ||||||| || ||| ||||||||    
T  34522654 gtaaccaccacctgagctgcatcaagcaacctaagtttcatctgccccctaaccagttttcgtgtctcctccacctgctccccattccgagacaagttca 34522753  T
Q  221 t 221  Q
    |    
T  34522754 t 34522754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 489
Target Start/End: Complemental strand, 34468362 - 34468245
Alignment:
Q  356 tatgatgtaagttccactttcaataatttgtataattacttactgtttatccttttaattatacttattgctagtatttctactcttggttgcgtaggta 455  Q
    |||||||||||||||||||| ||| |||||||||||||||     ||||||||||||||||||||||            || |||||||| |||||||||    
T  34468362 tatgatgtaagttccactttgaatgatttgtataattactc----tttatccttttaattatactta------------ctgctcttggtcgcgtaggta 34468279  T
Q  456 acaattactccagaagtgacttatagaggtgtga 489  Q
    ||  |||||||||||| ||||| |||||||||||    
T  34468278 accgttactccagaagcgacttctagaggtgtga 34468245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 34509378 - 34509333
Alignment:
Q  303 ctccacaaagtaaatcatcactgaggtttccccttctccttggaaa 348  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||    
T  34509378 ctccacaaagtaaatcatcactaaggtttccccttctccctggaaa 34509333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 27623156 - 27623086
Alignment:
Q  356 tatgatgtaagttccactttcaataatttgta-taattacttactgtttatccttttaattatacttattg 425  Q
    |||||||||||||||||||||||| ||||||| ||||| || ||| ||||||||| || ||||||| ||||    
T  27623156 tatgatgtaagttccactttcaatgatttgtagtaatttctgactatttatccttatatttatactaattg 27623086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 34488447 - 34488547
Alignment:
Q  123 gtaaccagcacc-gagctgcatcaagcaacctaagttccatctacagcctatgaagttttcgtgtctcctccacct-ctccccaatctgaggcaagttca 220  Q
    ||||||| |||| |||||||||||||||||| || |||||||| || ||||   |||||| |||||||||| |||| ||||||| || ||| ||||||||    
T  34488447 gtaaccaccacctgagctgcatcaagcaaccaaaattccatctgcaccctaaccagtttttgtgtctcctctacctgctccccattccgagacaagttca 34488546  T
Q  221 t 221  Q
    |    
T  34488547 t 34488547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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