View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18481_low_7 (Length: 496)
Name: NF18481_low_7
Description: NF18481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18481_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 43364210 - 43363744
Alignment:
| Q |
17 |
actttggtcataaacctactatccgccctaacggaaaaaagttgaaccccttattcatgaacaagaataacatgacatggcaagagtttgcatctcgagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43364210 |
actttggtcataaacctactatccgccctaacgggaaaaagttgaaccccttattcatgaacaagaataacatgacatggcaagaatttgcatctcgagt |
43364111 |
T |
|
| Q |
117 |
tcgaactttccaggtaggcttcatgggagagcctaatgagttgaggtcaggcagtggtgagtttcacgagaatccaacgtcttgcatatgtcaaaactca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43364110 |
tcgaactttccaggtaggcttcatgggagagcctaatgagttgaggtcaggcagtggtgagtttcacgagaatccaacgtcttgcatatgtcaaaactca |
43364011 |
T |
|
| Q |
217 |
gggtcggaggtaaaaaccgagggattttccaatcctcaaaatcaaacgcatgaaggcaataaggtagagaacaggacagaaaagaagcctgctgaggaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43364010 |
gggtcggaggtaaaaaccgagggattttccaatcctcaaaatcaaacgcatgaaggcaataaggtagagaacaggacagaaaagaagcctgctgaggaag |
43363911 |
T |
|
| Q |
317 |
aacgggagtggtctgaattagattatgatttggacaattatagaaagcaggttcagctcaaaggaactaatattgattcgctcccccttctaatgggtac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43363910 |
aacgggagtggtctgaattagattatgatttggacaattatagaaagcaggttcagctcaaaggaactaatattgattcgctcccccttctaatgggtac |
43363811 |
T |
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| Q |
417 |
tgaccaagctgaagtgcaagtattcttctcagattagatgttcgaattctagcaacttctctctgct |
483 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43363810 |
tgaccaagctgaagtacaagtattcttctcagattagatgttcgaattctagcaacttctccctgct |
43363744 |
T |
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