View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18482_high_13 (Length: 457)

Name: NF18482_high_13
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18482_high_13
NF18482_high_13
[»] scaffold0085 (1 HSPs)
scaffold0085 (130-447)||(50612-50930)
[»] chr1 (5 HSPs)
chr1 (310-394)||(7347678-7347762)
chr1 (310-385)||(46937555-46937630)
chr1 (319-394)||(35220793-35220868)
chr1 (312-385)||(49825844-49825917)
chr1 (302-346)||(5095822-5095866)
[»] chr8 (2 HSPs)
chr8 (310-394)||(1310115-1310199)
chr8 (323-391)||(7864481-7864548)
[»] chr4 (1 HSPs)
chr4 (301-392)||(26275534-26275625)
[»] chr7 (1 HSPs)
chr7 (305-392)||(30900106-30900193)
[»] chr5 (3 HSPs)
chr5 (319-385)||(27725501-27725567)
chr5 (303-385)||(9634949-9635030)
chr5 (319-365)||(33178399-33178445)
[»] chr3 (4 HSPs)
chr3 (311-389)||(36060251-36060329)
chr3 (302-394)||(33947627-33947719)
chr3 (322-392)||(162900-162970)
chr3 (302-382)||(54084289-54084369)
[»] chr6 (2 HSPs)
chr6 (304-385)||(13427711-13427792)
chr6 (310-393)||(9641085-9641168)
[»] chr2 (2 HSPs)
chr2 (325-394)||(11530029-11530098)
chr2 (324-385)||(17442970-17443031)


Alignment Details
Target: scaffold0085 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 130 - 447
Target Start/End: Original strand, 50612 - 50930
Alignment:
Q  130 atgcaggttaaagatgatggtacatcatatagaaagcgcgtataagcaagaaagtgataaaatcaataagtagaaatgaagataaaatgcaagtaataga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50612 atgcaggttaaagatgatggtacatcatatagaaagcgcgtataagcaagaaagtgataaaatcaataagtagaaatgaagataaaatgcaagtaataga 50711  T
Q  230 gaaagaatggaaaccgcgatatcgatgtaaataagtgttgtttttttatggcagtgcc-nnnnnnnnnnggcagctatagagctattgcttagcagaatt 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||           |||||||||||||||||||||||||||||||    
T  50712 gaaagaatggaaaccgcgatatcgatgtaaataagtgttgtttttttatggcggtgcctttttttttttggcagctatagagctattgcttagcagaatt 50811  T
Q  329 tgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctataggttgttatagcactattgcctagcaaaaattgaa 428  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  50812 tgaacaaattgcaattgttccgaaatacactatttagttcaagatattgtgaaatagaggctataggttgttatagcactattgcgtagcgaaaattgaa 50911  T
Q  429 taaaacactattttctgtg 447  Q
    |||||||||||||||||||    
T  50912 taaaacactattttctgtg 50930  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 394
Target Start/End: Original strand, 7347678 - 7347762
Alignment:
Q  310 gctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 394  Q
    |||||||| |||||||||||||||||||||| ||||||  | ||||||||||||||| ||| |||||||||||||| ||||||||    
T  7347678 gctattgcatagcagaatttgaacaaattgctattgttttgcaatacactatttagtacaaaatattgtgaaatagcggctatag 7347762  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 385
Target Start/End: Original strand, 46937555 - 46937630
Alignment:
Q  310 gctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 385  Q
    ||||||||||||| ||||||||||||| ||| |||||||||  || | ||||||||| ||| ||||||||||||||    
T  46937555 gctattgcttagcggaatttgaacaaagtgctattgttccgcgatgcgctatttagtacaaaatattgtgaaatag 46937630  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 394
Target Start/End: Original strand, 35220793 - 35220868
Alignment:
Q  319 tagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 394  Q
    ||||||||| ||||||||| |||||||||||| |||||  ||| |||| ||| ||||||||||||||  |||||||    
T  35220793 tagcagaatctgaacaaatagcaattgttccgcaatacgttatctagtacaaaatattgtgaaatagttgctatag 35220868  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 49825844 - 49825917
Alignment:
Q  312 tattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 385  Q
    |||||| |||||||||||||  |||   | ||||||| | ||||||||||||||| ||| ||||||||||||||    
T  49825844 tattgcatagcagaatttgactaaaacactattgttctgcaatacactatttagtacaaaatattgtgaaatag 49825917  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 5095822 - 5095866
Alignment:
Q  302 gctatagagctattgcttagcagaatttgaacaaattgcaattgt 346  Q
    ||||||||||| | || |||||||||||||||||||||| |||||    
T  5095822 gctatagagctctagcatagcagaatttgaacaaattgctattgt 5095866  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 394
Target Start/End: Original strand, 1310115 - 1310199
Alignment:
Q  310 gctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 394  Q
    |||||| | |||||||||||||||||||||| ||||||||   |||||||||||||| ||| |||||||||||||| ||||||||    
T  1310115 gctatttcgtagcagaatttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcggctatag 1310199  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 7864481 - 7864548
Alignment:
Q  323 agaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggcta 391  Q
    |||||||||||||||| | ||| ||||| ||||||||||||||| ||| |||||||  | |||||||||    
T  7864481 agaatttgaacaaatttctattattccgcaatacactatttagtacaa-atattgtctagtagaggcta 7864548  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 26275625 - 26275534
Alignment:
Q  301 agctatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctat 392  Q
    ||||||||  ||||||| |||| | |||||||||||| || |||||||| |||||| ||||||||| ||| |||||||||||||| ||||||    
T  26275625 agctatagcactattgcatagcgggatttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagcggctat 26275534  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 392
Target Start/End: Complemental strand, 30900193 - 30900106
Alignment:
Q  305 atagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctat 392  Q
    |||| |||||||| |||| |||||||||| ||| || ||||||| |  |||||||||||||| ||| |||||||||||||| ||||||    
T  30900193 atagtgctattgcatagcggaatttgaacgaatcgctattgttcagcgatacactatttagtacaaaatattgtgaaatagtggctat 30900106  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 27725501 - 27725567
Alignment:
Q  319 tagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 385  Q
    |||||||||||||||||||  ||||||||||| ||| ||||||||||| ||| ||||||| ||||||    
T  27725501 tagcagaatttgaacaaatcacaattgttccgcaatccactatttagtacaaaatattgtcaaatag 27725567  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 9635030 - 9634949
Alignment:
Q  303 ctatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 385  Q
    |||||| || |||||||||| |||||||||||||| || |||||||||  ||||||||||| ||  || ||||| ||||||||    
T  9635030 ctatagtgccattgcttagcggaatttgaacaaatggctattgttccg-catacactattttgtataaaatattttgaaatag 9634949  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 33178399 - 33178445
Alignment:
Q  319 tagcagaatttgaacaaattgcaattgttccgaaatacactatttag 365  Q
    |||||||||||||||||||||| ||||||| | |||||||| |||||    
T  33178399 tagcagaatttgaacaaattgccattgttctgcaatacactttttag 33178445  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 36060251 - 36060329
Alignment:
Q  311 ctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggc 389  Q
    ||||||| | ||||||||||||||||| ||| |||||||  |||||  |||||||| ||| ||||||||||||||||||    
T  36060251 ctattgcattgcagaatttgaacaaatcgcatttgttccacaatacgttatttagtacaaaatattgtgaaatagaggc 36060329  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 33947627 - 33947719
Alignment:
Q  302 gctatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 394  Q
    ||||||| |||||||| || |||||||||||||||   | ||||||| || |||||| ||| |||  || ||||| |||||||||||||||||    
T  33947627 gctatagtgctattgcataacagaatttgaacaaaacactattgttcagagatacaccattcagtaaaaaatattttgaaatagaggctatag 33947719  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 162900 - 162970
Alignment:
Q  322 cagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctat 392  Q
    ||||||||||||||||||  ||| ||| |  || | ||||||||| ||| |||||||||||||||||||||    
T  162900 cagaatttgaacaaattgttattattctgcgatgcgctatttagtacaaaatattgtgaaatagaggctat 162970  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 54084289 - 54084369
Alignment:
Q  302 gctatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaa 382  Q
    |||||||  ||||||| |||| ||||||||||||| ||  | ||||||  ||||| ||||||||| ||| |||||||||||    
T  54084289 gctatagcactattgcatagcggaatttgaacaaactgataatgttccacaatacgctatttagtgcaaaatattgtgaaa 54084369  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 13427792 - 13427711
Alignment:
Q  304 tatagagctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 385  Q
    |||||||||||||| ||||||||||| ||||||| || ||||||||   | ||| |||||||| ||| ||||||||||||||    
T  13427792 tatagagctattgcatagcagaatttcaacaaatcgctattgttccatgacacattatttagtacaaaatattgtgaaatag 13427711  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 393
Target Start/End: Complemental strand, 9641168 - 9641085
Alignment:
Q  310 gctattgcttagcagaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctata 393  Q
    |||||||| ||| |||||||||||||||||| ||| ||| |  ||||||||||||||   | |||||| ||||||| |||||||    
T  9641168 gctattgcatagtagaatttgaacaaattgctattcttctgcgatacactatttagtatcaaatattgagaaatagcggctata 9641085  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 11530029 - 11530098
Alignment:
Q  325 aatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatagaggctatag 394  Q
    |||||||||||||  | ||||||| |  |||||||||||||| ||  |||||||||||||| ||||||||    
T  11530029 aatttgaacaaatcactattgttctgcgatacactatttagtacataatattgtgaaatagcggctatag 11530098  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 17443031 - 17442970
Alignment:
Q  324 gaatttgaacaaattgcaattgttccgaaatacactatttagtccaagatattgtgaaatag 385  Q
    ||||||||||||||||| ||||||| ||| |||  |||||||| ||| || |||||||||||    
T  17443031 gaatttgaacaaattgctattgttcagaattacgatatttagtgcaaaatgttgtgaaatag 17442970  T

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