View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18482_high_16 (Length: 374)

Name: NF18482_high_16
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18482_high_16
NF18482_high_16
[»] chr8 (2 HSPs)
chr8 (16-355)||(9003288-9003629)
chr8 (95-178)||(32225522-32225605)
[»] chr5 (2 HSPs)
chr5 (95-176)||(3575526-3575607)
chr5 (96-178)||(8450197-8450279)
[»] chr4 (2 HSPs)
chr4 (96-172)||(12276670-12276746)
chr4 (97-175)||(42048509-42048587)
[»] chr2 (2 HSPs)
chr2 (90-176)||(26496886-26496972)
chr2 (236-264)||(17775541-17775569)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 9003288 - 9003629
Alignment:
Q  16 caagaaccaatcgcgctacggctgcagggttctggaaagccaccggtcgtgacaaagttatatatagtaatggaaaaaggattggaatgagaaagactct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003288 caagaaccaatcgcgctacggctgcagggttctggaaagccaccggtcgtgacaaagttatatatagtaatggaaaaaggattggaatgagaaagactct 9003387  T
Q  116 tgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtatagactcgacgataacaccaccaatgacaccaatctggta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003388 tgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtatagactcgacgataacaccaccaatgacaccaatctggta 9003487  T
Q  216 cgtatttgatacaaatatacgtctggataaacaacttaatcaagcactttgttgaatgatacttatgtatatatttatatagaaaataaattggctaaat 315  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||    
T  9003488 agtatttgatacaaatatacgtctggataaacaacttaatcaagcacttcgctgaatgatacttatgtatatatttatatagaaaataaattggttaaat 9003587  T
Q  316 tg--ttgtttattgcaacgaaatcttaggtgtcgaatatgat 355  Q
    ||  ||||||||||| ||||||| ||||||||||||||||||    
T  9003588 tgttttgtttattgcgacgaaattttaggtgtcgaatatgat 9003629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 32225605 - 32225522
Alignment:
Q  95 gattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtatag 178  Q
    |||||||||||| ||||| || ||||||||||||||  | || ||| |||| || ||| ||||||||||||||||||| |||||    
T  32225605 gattggaatgaggaagacactcgttttctacaaaggaagagcacctaatggacagaaaactgattggatcatgcatgaatatag 32225522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 3575526 - 3575607
Alignment:
Q  95 gattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtat 176  Q
    |||||||||||||||||||||||| ||||| |||||  | || ||| |||| ||||||||||||||||||||||||||||||    
T  3575526 gattggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatgagtat 3575607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 8450197 - 8450279
Alignment:
Q  96 attggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtatag 178  Q
    ||||| ||||| ||||| |||||||||||||||||  | || ||| |||| || ||||||||||||||||||||||| |||||    
T  8450197 attgggatgaggaagacccttgttttctacaaaggaagagcccctaatggacagaaatctgattggatcatgcatgaatatag 8450279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 12276670 - 12276746
Alignment:
Q  96 attggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatga 172  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||  |||||||||| ||||||||    
T  12276670 attggaatgagaaagactcttgtgttctacaaaggtagagctcctcatggacaaaagactgattggattatgcatga 12276746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 42048587 - 42048509
Alignment:
Q  97 ttggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagta 175  Q
    |||| |||||||||||||| || || |||||||| ||||| ||  |||| || ||||||||||||||||||||||||||    
T  42048587 ttgggatgagaaagactctagtgttttacaaaggacgtgccccaaatggacagaaatctgattggatcatgcatgagta 42048509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 26496886 - 26496972
Alignment:
Q  90 aaaaggattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtat 176  Q
    ||||||||||||||||| || ||  | || |||||||  || |||||||||||||| || ||| |||||||||||||||||||||||    
T  26496886 aaaaggattggaatgaggaaaaccttagtgttctacactggacgtgctcctcatggtcacaaaactgattggatcatgcatgagtat 26496972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 17775569 - 17775541
Alignment:
Q  236 gtctggataaacaacttaatcaagcactt 264  Q
    |||||||||||||||||||||||||||||    
T  17775569 gtctggataaacaacttaatcaagcactt 17775541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University