View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_high_19 (Length: 358)
Name: NF18482_high_19
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 22735222 - 22735566
Alignment:
| Q |
1 |
cacacactattccttaataaaatctactattagtacgtatcaaatatcaatgatttcatctgtcttgtacgaaaaaggatggaaaagaaaagtgaaatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
22735222 |
cacacactattccttaataaaatctactattagtacgtatcaaatatcaatgattttatttgtcttgtacgaaaaaggatggaaaagaaaagtgaaatgc |
22735321 |
T |
|
| Q |
101 |
aggagaggggataacgaatgtgcttgtttgaatccagaaatagatgttttaattctatgattgaaatatcttt--nnnnnnnnnngttatgattgaaata |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22735322 |
aggagaggggataacgaatgtgcttgtttgaatccagaaatagatgttttaattctatgattgaaatatctttcaaaaaaaaaaaattatgattgaaatg |
22735421 |
T |
|
| Q |
199 |
tatatcttggaaacaaacaattcgtgtcttatgtggtgtaattttcttctgcaaaagttaggctaaaaaattattctctcgttgaacaagaattgttact |
298 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22735422 |
tatatcttggaaacaaacaattcgtgtcctatgtggtgtaattttcttctgcaaaagttaggctaaaaaattattctctctttgaacaagaattgttact |
22735521 |
T |
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| Q |
299 |
actccttagtttcaatgaccccattatgaatgacacgtcaatcgt |
343 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22735522 |
actccttactttcaatgaccccattatgaatgacacgtcaatcgt |
22735566 |
T |
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