View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18482_high_20 (Length: 355)
Name: NF18482_high_20
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_high_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 8289445 - 8289765
Alignment:
| Q |
18 |
gtgacaaactcagcatcattcgaagctaaaaacaatacaacatctgccacatgcttaggtgtgagcaccactccttcaagtcttgcatatcccttgtaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8289445 |
gtgacaaactcagcatcattcgaagctaaaaacaatacaacatctgccacatgcttaggtgtgagcaccactccttcaagtcttgcatatcccttataag |
8289544 |
T |
|
| Q |
118 |
tctcttgtgccttttcctcactcacccctaataatttacaagtcaaaggtgtcgctagtccattcggtgagacacagttcactcttattccatgtgcagc |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8289545 |
tctcttgtgccttttccttactcacccctaataatttacaagtcaaaggtgtcgctagtccattcggtgagacacagttcactcttattccgtgtgcagc |
8289644 |
T |
|
| Q |
218 |
cagttgcacgctggctgcacgcattagtcctaatactgcgtgctttgacattgtgtaatccgttgacctcaggaatccatgactactgtgaacactcccc |
317 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8289645 |
cagttgcacactggctgcacgcattagccctaatactgcgtgctttgacatcgtgtaatccgttgacctcaggaatccatgactactgtgaacactcccc |
8289744 |
T |
|
| Q |
318 |
gtgcacacaatacttccccta |
338 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
8289745 |
gtgcacacaatactcccccta |
8289765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 43 - 286
Target Start/End: Original strand, 8256760 - 8257003
Alignment:
| Q |
43 |
ctaaaaacaatacaacatctgccacatgcttaggtgtgagcaccactccttcaagtcttgcatatcccttgtaagtctcttgtgccttttcctcactcac |
142 |
Q |
| |
|
|||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| ||||||||| | |||||||||||| | || ||||| |||| |
|
|
| T |
8256760 |
ctaaaaacaatacagcatctgccacatgtttgggtgtgagcaccactccctcaagccttgcatatttttggtaagtctcttgagttttctcctcgctcat |
8256859 |
T |
|
| Q |
143 |
ccctaataatttacaagtcaaaggtgtcgctagtccattcggtgagacacagttcactcttattccatgtgcagccagttgcacgctggctgcacgcatt |
242 |
Q |
| |
|
||| || | |||||||||||||||||||| |||||| |||| || |||||||| |||| |||||||||||| ||||||||||| || || ||||||||| |
|
|
| T |
8256860 |
ccccaaaagcttacaagtcaaaggtgtcgccagtccactcggcgaaacacagttgactcgtattccatgtgcggccagttgcacactagccgcacgcatt |
8256959 |
T |
|
| Q |
243 |
agtcctaatactgcgtgctttgacattgtgtaatccgttgacct |
286 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8256960 |
agtcccaacactgcatgctttgacattgtgtagtccgttgacct |
8257003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 8259043 - 8259312
Alignment:
| Q |
18 |
gtgacaaactcagcatcattcgaagctaaaaacaatacaacatctgccacatgcttaggtgtgagcaccactccttcaagtcttgcatatcccttgtaag |
117 |
Q |
| |
|
|||| ||||||||| | || ||| |||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| ||||||||| | ||||| |
|
|
| T |
8259043 |
gtgataaactcagcctgatcagaaactaaaaacaatacagcatctgccacatgtttgggtgtgagcaccactccctcaagccttgcatatttttggtaag |
8259142 |
T |
|
| Q |
118 |
tctcttgtgccttttcctcactcacccctaataatttacaagtcaaaggtgtcgctagtccattcggtgagacacagttcactcttattccatgtgcagc |
217 |
Q |
| |
|
|| ||||||| || || || |||| ||| | || ||||||||||| ||||| ||||||||||| || || |||||||| |||||||| || |||| || |
|
|
| T |
8259143 |
tcgcttgtgctttctcttcgctcatccccgacaacttacaagtcaatggtgttgctagtccatttggcgaaacacagttgactcttatcccgtgtgtggc |
8259242 |
T |
|
| Q |
218 |
cagttgcacgctggctgcacgcattagtcctaatactgcgtgctttgacattgtgtaatccgttgacctc |
287 |
Q |
| |
|
||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8259243 |
cagttgcacactggccgcacgcattagccccaacactgcatgctttgacattgtgtaatccgttgacctc |
8259312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 8308500 - 8308771
Alignment:
| Q |
16 |
cagtgacaaactcagcatcattcgaagctaaaaacaatacaacatctgccacatgcttaggtgtgagcaccactccttcaagtcttgcatatcccttgta |
115 |
Q |
| |
|
|||| ||||||||||| | ||| ||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
8308500 |
cagttacaaactcagcctgattagaaactaaaaacaatacagcatctgccacatgtttaggtgtgagcaccactccctcaagccttgcataatttttata |
8308599 |
T |
|
| Q |
116 |
agtctcttgtgccttttcctcactcacccctaataatttacaagtcaaaggtgtcgctagtccattcggtgagacacagttcactcttattccatgtgca |
215 |
Q |
| |
|
| |||||||||| | || | |||| || || || ||||||||||||||||| || | |||||||| |||||| ||||||||||||| || ||||| |
|
|
| T |
8308600 |
attctcttgtgcttcctcattgctcattcccaacaacttacaagtcaaaggtgttgccaacccattcggcgagacagagttcactcttatcccgtgtgcg |
8308699 |
T |
|
| Q |
216 |
gccagttgcacgctggctgcacgcattagtcctaatactgcgtgctttgacattgtgtaatccgttgacctc |
287 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| || |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8308700 |
gctagttgtacgctggccgcacgcattagccccaatactgcatgctttgacatcgtgtaatccgttgacctc |
8308771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 8324763 - 8324816
Alignment:
| Q |
158 |
agtcaaaggtgtcgctagtccattcggtgagacacagttcactcttattccatg |
211 |
Q |
| |
|
|||||| ||||| |||| |||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
8324763 |
agtcaatggtgttgctaatccatttggtgagacacaattcacccttattccatg |
8324816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University