View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18482_high_4 (Length: 671)

Name: NF18482_high_4
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18482_high_4
NF18482_high_4
[»] chr4 (1 HSPs)
chr4 (5-652)||(8173138-8173785)


Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 5 - 652
Target Start/End: Complemental strand, 8173785 - 8173138
Alignment:
Q  5 cagctttggatgaatctttgttggagcatgatgaactgttacgcgttctcatagccaatttgttaactgctcaacacagatggttcagcaggccaatgca 104  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8173785 cagctttggatgaatcttttttggagcatgatgaactgttatgcgttctcaaagccaatttgttaactgctcaacccagatggttcagcaggccaatgca 8173686  T
Q  105 cattgtcgtgacttacagtttgatgtaggagacttgatactggttcgtttaaagcctcaccgacagatctaagttcgacaacaacaccaacagaaactat 204  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8173685 cactgtcgtgacttacagtttgatgtaggagacttggtactggttcgtttaaagcctcaccgacagatctaagttcgacaacaacaccaacagaaactat 8173586  T
Q  205 cgaagaaattttatgtgcctcttgagatcctcgaatgcattttcaaagtggcttaccgacttcagttgccaccagagattcgtatccatccagtttttta 304  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  8173585 cgaagaaattttatgtgcctcttgagatcctcgaatgcatttgcaaagtggcttactgatttcagttgccaccagagattcgtatccatccagtttttta 8173486  T
Q  305 tgttccaaacttgaaaccatttcgcggatctgcgttaccattccctcatgttctacctccagacaatatctctaaccaaacctgttgaggtccctgtagc 404  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8173485 tgtttcaaacttgaaaccatttcgcggatctgcgttacctttccctcatgttctacctccaaacaatatctctaaccaaacctgttgaggtccctgtagc 8173386  T
Q  405 cattgcttccactcgtactgttttggtcaatggtgttccacaacagcaagttctcgtgcagcgggctaattgtcccccggatgaagcctcatgggaagat 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  8173385 cattgcttccactcgtactgttttggtcaatggtgttccacaacagcaagttctcgtgcagtgggctaattgtccaccggatgaagcctcatgggaagat 8173286  T
Q  505 tttgtgcagttccaggctgcttttccatccttccaccttgaggacaaggtggcatttgaagaggggggaacgatacaagcctaatccatgaagaggtaat 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  8173285 tttgtgcagttccaggctgcttttccatccttccaccttgaggacaaggtggcatttgaagaggggggaatgatacaagcccaatccatgaagaggtaat 8173186  T
Q  605 gagcccaaatgatgaagagtcgtccaataccaatgctagcgaggaaat 652  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8173185 gagcccaaatgatgaagagtcgtccaataccaatgctagtgaggaaat 8173138  T

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