View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18482_high_7 (Length: 489)

Name: NF18482_high_7
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18482_high_7
NF18482_high_7
[»] chr1 (2 HSPs)
chr1 (1-468)||(31070042-31070507)
chr1 (4-305)||(23894689-23894997)
[»] chr3 (1 HSPs)
chr3 (4-467)||(39397176-39397634)


Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 31070507 - 31070042
Alignment:
Q  1 aaagattacaaagaagaatgcctagaaaaaggcaatccagtactatctctaaaaagcaaaacttctaaaaacaaagagggatcattccactattgagtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  31070507 aaagattacaaagaagaatgcctagaaaaaggcaatccagtactatctctaaaaaccaaaacttctaaaaataaagagggatcattccactattgagtgg 31070408  T
Q  101 taaagcttgacaagccatgtccatttttagcccaagcatccgctacttggttcccctccctaggaatgtgcgtacatattgtgtttaagcccttcgccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31070407 taaagcttgacaagccatgtccatttttagcccaagcatccgctacttggttcccctccctaggaatgtgcgtacatattgtgtttaagtccttcgccat 31070308  T
Q  201 attcttacaattattccaccggtttccaatttgccacggaacattatcatctttgttgaaaggtgctaaaaggctgtaaggagtcactttcgatccagat 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31070307 attcttacaattattccaccggttttcaatttgccacggaacattatcatctttgttgaaaggtgctaaaaggctgtaaggagtcactttcgatccagat 31070208  T
Q  301 attacaaaaactcaattccacagccttttcaattacgtacatagctgctgaaatttctgtaacagtagcagaagcatggtcgagattctgcacaaaaann 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       
T  31070207 attacaaaaactcaattccacagccttttcaattacgtacatagctgctgaaatttttgtaacagtagcagaagcatggtcgagattctgcacaaaa--c 31070110  T
Q  401 nnnnnatgaaatcacactgagagttccggaacacgcctcctattgacccgcaagacggagatccatag 468  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31070109 cccccatgaaatcacactgagagttccggaacacgcctcctattgacccgcaagacggagatccatag 31070042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 4 - 305
Target Start/End: Complemental strand, 23894997 - 23894689
Alignment:
Q  4 gattacaaagaagaatgcctagaaaaaggcaatccagtactatctctaaaaagcaaaacttctaaaaacaaagagggatcattccactattgagtggtaa 103  Q
    ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |||     
T  23894997 gattacaaagaggaaggcctagaaaaaggcaatctagtactatctctaaaaagcaaaacttctaaaaataaagggggatcattccaccattgagtagtat 23894898  T
Q  104 agcttgacaagccatgtccatttttagcccaagcatccgctacttggttcccctccctaggaatgtgcgtacatattgtg--------tttaagcccttc 195  Q
    | |||  |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||| |||        || |||||||||    
T  23894897 aacttcgcaagccatgtccatttttagctaaagcatccgctacttgattcccctccctaggaatgtgcgtacatatagtgttcaaggcttcaagcccttc 23894798  T
Q  196 gccatattcttacaattattccaccggtttccaatttgccacggaacattatcatctttgttgaaaggtgctaaaaggctgtaaggagtcactttcgatc 295  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||  ||||   ||||||| |||||||||||||||    
T  23894797 gccatattcttacaattattccaccagtttctaatttgccacggaacattatcatctttgttg-aaggcactaactagctgtaaagagtcactttcgatc 23894699  T
Q  296 cagatattac 305  Q
    ||||||||||    
T  23894698 cagatattac 23894689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 4 - 467
Target Start/End: Original strand, 39397176 - 39397634
Alignment:
Q  4 gattacaaagaagaatgcctagaaaaaggcaatccagtactatctctaaaaagcaaaacttctaaaaacaaagagggatcattccactattgagtggtaa 103  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||    
T  39397176 gattacaaagaggaaggcctagaaaaaggcaatccagtactatctctaaaaagcaaaacttctaaaaataaagggggatcattccaccattgagtggtaa 39397275  T
Q  104 agcttgacaagccatgtccatttttagcccaagcatccgctacttggttcccctccctaggaatgtgcgtacatattgtgtttaagcccttcgccatatt 203  Q
    | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  39397276 aacttggcaagccatgtccatttttagccaaagcatccgctacttggttcccctccctaggaatgtgcgtacatatagttttcaagcccttcgccatatt 39397375  T
Q  204 cttacaattattccaccggtttccaatttgccacggaacattatcatctttgttgaaaggtgctaaaaggctgtaaggagtcactttcgatccagatatt 303  Q
    |||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||| |||| ||||| | ||||||| |||||||||| ||||||||||||    
T  39397376 cttacagttattccaccggtttctaatttgccatggaacattatcatctttattg-aaggcgctaacaagctgtaaagagtcacttttgatccagatatt 39397474  T
Q  304 acaaaaactcaattccacagccttttcaattacgtacatagctgctgaaatttctgtaacagtagcagaagcatggtcgagattctgcacaaaaannnnn 403  Q
    ||||||||  || ||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||          
T  39397475 acaaaaacctaagtccaccgccttttcaattgcgtacatagctgctgaaatttcagtaacaatagcagaagcatggccgagattctgcacaaaa--cctc 39397572  T
Q  404 nnatgaaatcacactgagagttccggaacacgcctcctattgacccgcaagacggagatccata 467  Q
      |||||||||||||  ||||| | ||||| ||| |||||||||| |||||||||||| |||||    
T  39397573 ccatgaaatcacact--gagtttcagaacatgccccctattgacctgcaagacggagagccata 39397634  T

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