View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_10 (Length: 487)
Name: NF18482_low_10
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 34582661 - 34583129
Alignment:
| Q |
18 |
ggtaatgtaattgacgagaaatggaggcaaaacgatttggggtcaggtgaggttgaccatggtcccatcgnnnnnnnctaactcgaatttcattaaaaag |
117 |
Q |
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| T |
34582661 |
ggtaatgtaattgacgagaaatggaggcaaaacgatttggggtcaggtggggttgaccatggtcccatcgtttttttctaactcgaatttcattaaa--g |
34582758 |
T |
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| Q |
118 |
gtttagaataatgtcttttattaccttcnnnnnnnnnngaggggaatgtcttttattacttgccaaattgtatacttctctaattattcataccttcata |
217 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34582759 |
gtttagaataatgtcttttattacttt--tttctttttgaggggaatgtcttttattacttgccaaattgtatacttctctaattattcataccttcata |
34582856 |
T |
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| Q |
218 |
----------tgatttaggaaaaatcatggtcccaccgacctacactttaattctcaagttaatc----------ggtgggtcacgggtgagaggtttag |
297 |
Q |
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| T |
34582857 |
agtgattatgtgatttaggaaaaatcatggtcccaccgacctacactttaattctcaacttaatctaatgtttgaggtgggtcacaggtgagaggtttag |
34582956 |
T |
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| Q |
298 |
aatagtatatacattgatagatgattatgtgatgcttacacaggaagaaagatgttgtattgagacgtcctaaagtccactccaaaacagtggcctctct |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34582957 |
aatagtatatacattgatagatgattatgtgatgcttacacaggaagaaagatgttgtattgagacgtcctaaagtccactccgaaacagtggcctctct |
34583056 |
T |
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| Q |
398 |
gtgtaagcatagtgtctatggtgatatgaggatttgacttgtaagcatagttaattttggcgtgataacctct |
470 |
Q |
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| T |
34583057 |
atgtaagcatagtgtctatggtgatatgaggagttgacttgtaagcatagttaattttggcgtgataacctct |
34583129 |
T |
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