View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_11 (Length: 480)
Name: NF18482_low_11
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 2045056 - 2044630
Alignment:
| Q |
16 |
aatactattgcgtagtcaaatttgaacaaactatattattttcaacaacatacaacgtaagagagtaaaatcatatgnnnnnnntaaacaacatacatct |
115 |
Q |
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| T |
2045056 |
aatactattgcgtagtcaaatttgaacaaactat--tattttcaacaacata-------agagagtaaaatcatatgaataaaaaaaa-aacatacatct |
2044967 |
T |
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| Q |
116 |
aggaaagcctttgagtgaatatcgcatgcatcgctactaagacttttagcattgggtgcgggtgcgggtgcagg------agatccagtaacaacttttt |
209 |
Q |
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| T |
2044966 |
aggaaagcctttgagtgaatatcgcatgcatcgctactaagacttttagcattgggtgcgggtgcgggtgcaggtgcaggagatccagtaacaacttttt |
2044867 |
T |
|
| Q |
210 |
catttcgaatagttcgaggaccaaacacagcatccacagccccgtctaccatagaagctccagccccaaaagccactcctacaaattgaaagaaaacata |
309 |
Q |
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| T |
2044866 |
catttcgaatagttcgaggacaaaacacagcatccacagccctgtctaccatagaag-tccagccccaaaagccactcctacaaattgaaagaaaacata |
2044768 |
T |
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| Q |
310 |
ctcaattcggtacaaaatcacaagtatattggaaatggtattgccatgccatgtcctttgtaatagagtactagccgaaacaagtcctaattgaaagaat |
409 |
Q |
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| T |
2044767 |
ctcaattcggtacaaaatcacaagtatattggaaatggtattgtcatgccatgtcctttgtaatagagta---------------cctaattgaaagaat |
2044683 |
T |
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| Q |
410 |
attactttccctaactttctcttatgaaatatgaatcctctcggattcgagtt |
462 |
Q |
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| T |
2044682 |
attactttccctaactttctcttatgaaatatgaatcctctcggattcgagtt |
2044630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 334
Target Start/End: Complemental strand, 2041600 - 2041473
Alignment:
| Q |
207 |
tttcatttcgaatagttcgaggaccaaacacagcatccacagccccgtctaccatagaagctccagccccaaaagccactcctacaaattgaaagaaaac |
306 |
Q |
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| T |
2041600 |
tttcacttcgaatagttggagggccaaatacagcatccacagccctgcgtgcaacagaaacttcagtccaaaaagccactcctacaaattgaaagtaaac |
2041501 |
T |
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| Q |
307 |
atactcaattcggtacaaaatcacaagt |
334 |
Q |
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| T |
2041500 |
aaactcaattcattacaaaatcataagt |
2041473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 2041730 - 2041651
Alignment:
| Q |
101 |
aaacaacatacatctaggaaagcctttgagtgaatatcgcatgcatcgctactaagacttttagcattgggtgcgggtgc |
180 |
Q |
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| T |
2041730 |
aaacaacttacatcaaggaaagcctttgagtgaatattgcatgcatcgctaccaagactttgagtattgggtgcaggtgc |
2041651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 2041338 - 2041306
Alignment:
| Q |
405 |
agaatattactttccctaactttctcttatgaa |
437 |
Q |
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| T |
2041338 |
agaatattactttccctaactctctcttatgaa |
2041306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 37032702 - 37032748
Alignment:
| Q |
101 |
aaacaacatacatctaggaaagcctttgagtgaatatcgcatgcatc |
147 |
Q |
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| T |
37032702 |
aaacaacatacatcttggaatgcctttgaatgaatattgcatgcatc |
37032748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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