View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18482_low_12 (Length: 479)

Name: NF18482_low_12
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18482_low_12
NF18482_low_12
[»] chr3 (9 HSPs)
chr3 (187-375)||(22852343-22852529)
chr3 (293-374)||(22827969-22828050)
chr3 (297-375)||(22796819-22796897)
chr3 (293-375)||(22815663-22815745)
chr3 (106-166)||(22848680-22848740)
chr3 (319-375)||(22838434-22838490)
chr3 (121-166)||(40654282-40654327)
chr3 (121-164)||(8473119-8473162)
chr3 (124-164)||(55216628-55216668)
[»] chr8 (1 HSPs)
chr8 (297-375)||(5621058-5621136)
[»] chr5 (3 HSPs)
chr5 (121-164)||(19914536-19914579)
chr5 (121-164)||(27514337-27514380)
chr5 (121-165)||(35996074-35996118)
[»] chr4 (4 HSPs)
chr4 (121-164)||(3257597-3257640)
chr4 (121-158)||(19747363-19747400)
chr4 (121-158)||(19792406-19792443)
chr4 (124-164)||(10395256-10395296)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 187 - 375
Target Start/End: Original strand, 22852343 - 22852529
Alignment:
Q  187 gctaacttatccactaagttataaactaatcacaaatcgctattcagtaannnnnnnnnnnccttcccaaacatagccttaatatgagaatggaaattaa 286  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||            ||||||||||||||||||||||||||||||||||||||    
T  22852343 gctaacttatccgctaagttataaactaatcacaaatcgctattcactaatttttttttt--cttcccaaacatagccttaatatgagaatggaaattaa 22852440  T
Q  287 cattcaattcaacaatgcataaacataatcatcaaacaaatacttagaatttccatacctgaaccacctccaccatcattcatcctctg 375  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22852441 cattcaattcaacaatgcataaacataatcatcaaacaaaaacttagaatttccatacctgaaccacctccaccatcattcatcctctg 22852529  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 22827969 - 22828050
Alignment:
Q  293 attcaacaatgcataaacataatcatcaaacaaatacttagaatttccatacctgaaccacctccaccatcattcatcctct 374  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  22827969 attcaacaatgcataaacataattatcaaacaaaaactttgaatttccatacctgaaccacctccaccatctttcatcctct 22828050  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 22796819 - 22796897
Alignment:
Q  297 aacaatgcataaacataatcatcaaacaaatacttagaatttccatacctgaaccacctccaccatcattcatcctctg 375  Q
    ||||||||||||||||||| ||||||| |  |||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  22796819 aacaatgcataaacataattatcaaactagaactttgaatttccatacctgaaacacctccaccatctttcatcctctg 22796897  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 22815663 - 22815745
Alignment:
Q  293 attcaacaatgcataaacataatcatcaaacaaatacttagaatttccatacctgaaccacctccaccatcattcatcctctg 375  Q
    |||||||||| |||||||||||| ||||||||   |||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  22815663 attcaacaatacataaacataattatcaaacatgaactttgaatttccatacctgaaccaccttcaccatctttcatcctctg 22815745  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 22848680 - 22848740
Alignment:
Q  106 ccgaactaaccgctgaactgaaccattagtaacagttttgaaactgaactgaaagagttta 166  Q
    ||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  22848680 ccgaattaactgctgaactaaaccattagtaacagttttgaaactgaactgaaagaattta 22848740  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 22838434 - 22838490
Alignment:
Q  319 caaacaaatacttagaatttccatacctgaaccacctccaccatcattcatcctctg 375  Q
    |||||||  |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  22838434 caaacaagaactttgaatttccatacctgaaccacctccaccatctttcatcctctg 22838490  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 40654327 - 40654282
Alignment:
Q  121 aactgaaccattagtaacagttttgaaactgaactgaaagagttta 166  Q
    |||||||| |||| ||||||||||||||||||||||||| ||||||    
T  40654327 aactgaactattactaacagttttgaaactgaactgaaacagttta 40654282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 8473119 - 8473162
Alignment:
Q  121 aactgaaccattagtaacagttttgaaactgaactgaaagagtt 164  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||    
T  8473119 aactgaaccattactaacagttctgaaactgaactgaaacagtt 8473162  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 55216628 - 55216668
Alignment:
Q  124 tgaaccattagtaacagttttgaaactgaactgaaagagtt 164  Q
    |||||||||| |||||||| |||||||||||||||| ||||    
T  55216628 tgaaccattactaacagttctgaaactgaactgaaacagtt 55216668  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 5621136 - 5621058
Alignment:
Q  297 aacaatgcataaacataatcatcaaacaaatacttagaatttccatacctgaaccacctccaccatcattcatcctctg 375  Q
    ||||||||||||||||||| ||||||| |  |||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  5621136 aacaatgcataaacataattatcaaactagaactttgaatttccatacctgaaacacctccaccatctttcatcctctg 5621058  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 19914579 - 19914536
Alignment:
Q  121 aactgaaccattagtaacagttttgaaactgaactgaaagagtt 164  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||    
T  19914579 aactgaaccattactaacagttctgaaactgaactgaaacagtt 19914536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 27514337 - 27514380
Alignment:
Q  121 aactgaaccattagtaacagttttgaaactgaactgaaagagtt 164  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||    
T  27514337 aactgaaccattactaacagttctgaaactgaactgaaacagtt 27514380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 35996118 - 35996074
Alignment:
Q  121 aactgaaccattagtaacagttttgaaactgaactgaaagagttt 165  Q
    ||||||||||||| ||||| || |||||||||||||||| |||||    
T  35996118 aactgaaccattactaacaattctgaaactgaactgaaacagttt 35996074  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 3257597 - 3257640
Alignment:
Q  121 aactgaaccattagtaacagttttgaaactgaactgaaagagtt 164  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||    
T  3257597 aactgaatcattattaacagttttgaaactgaactgaaacagtt 3257640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 19747363 - 19747400
Alignment:
Q  121 aactgaaccattagtaacagttttgaaactgaactgaa 158  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  19747363 aactgaaccattactaacagttctgaaactgaactgaa 19747400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 19792443 - 19792406
Alignment:
Q  121 aactgaaccattagtaacagttttgaaactgaactgaa 158  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  19792443 aactgaaccattactaacagttctgaaactgaactgaa 19792406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 10395256 - 10395296
Alignment:
Q  124 tgaaccattagtaacagttttgaaactgaactgaaagagtt 164  Q
    |||||||||| |||||||||| |||||||||||||| ||||    
T  10395256 tgaaccattactaacagttttcaaactgaactgaaacagtt 10395296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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