View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_13 (Length: 477)
Name: NF18482_low_13
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_13 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 97 - 461
Target Start/End: Original strand, 11786155 - 11786523
Alignment:
| Q |
97 |
ttagtattgtagaattatctccttaacaaaaagtattgtagcattatcactttattattataaaagttattcatgatgaaagacttaagttatgcaaggg |
196 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||| |||||| |||||||| ||||||| |
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| T |
11786155 |
ttagtattgtagaattatctccttaacaaaa-gtattgtagcattatcactctataactataaaagttactcagaccgaaagatttaagttacgcaaggg |
11786253 |
T |
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| Q |
197 |
tacttttgtctttttagttgggagtga---atatttgttgcgagaagagcaattttcttaggattatgtaacatgcatagagaagagtgnnnnnnnn--c |
291 |
Q |
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|| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
11786254 |
tatttttgtcttttcagttgggagtgagaaatatttgttgcaagaagagcaattttcttaggaatatgtaacatgcatagagaagagtgttttttttttc |
11786353 |
T |
|
| Q |
292 |
atctgataagataaacaattccagatatttgtactttaatggcatcccctccatccatggaacatcccaaagcatctaacgtagtttcttctccattccc |
391 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |
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| T |
11786354 |
atctgataagatgaacaattccagatatttgtactttaatggcatcccctccatccatggaacatcccaaagtatctaacgtaatttcttctccatttcc |
11786453 |
T |
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| Q |
392 |
aatctctcttcttagacttttcagagaccaattcgacgtaactccccacaccactatctctaaagtatct |
461 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11786454 |
aatctctcttcttagacttttcgaagaccaattcgacgtaactccccacaccactatctctaaagtatct |
11786523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 97 - 461
Target Start/End: Original strand, 11798322 - 11798690
Alignment:
| Q |
97 |
ttagtattgtagaattatctccttaacaaaaagtattgtagcattatcactttattattataaaagttattcatgatgaaagacttaagttatgcaaggg |
196 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||| |||||| |||||||| ||||||| |
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| T |
11798322 |
ttagtattgtagaattatctccttaacaaaa-gtattgtagcattatcactctataactataaaagttactcagaccgaaagatttaagttacgcaaggg |
11798420 |
T |
|
| Q |
197 |
tacttttgtctttttagttgggagtga---atatttgttgcgagaagagcaattttcttaggattatgtaacatgcatagagaagagtgnnnnnnnn--c |
291 |
Q |
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|| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
11798421 |
tatttttgtcttttcagttgggagtgagaaatatttgttgcaagaagagcaattttcttaggaatatgtaacatgcatagagaagagtgttttttttttc |
11798520 |
T |
|
| Q |
292 |
atctgataagataaacaattccagatatttgtactttaatggcatcccctccatccatggaacatcccaaagcatctaacgtagtttcttctccattccc |
391 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |
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| T |
11798521 |
atctgataagatgaacaattccagatatttgtactttaatggcatcccctccatccatggaacatcccaaagtatctaacgtaatttcttctccatttcc |
11798620 |
T |
|
| Q |
392 |
aatctctcttcttagacttttcagagaccaattcgacgtaactccccacaccactatctctaaagtatct |
461 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11798621 |
aatctctcttcttagacttttcgaagaccaattcgacgtaactccccacaccactatctctaaagtatct |
11798690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 11798008 - 11798093
Alignment:
| Q |
15 |
gctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttcaattcttcacttttttag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11798008 |
gctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattatggttagttcaattcttcacttttttag |
11798093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 11696167 - 11696229
Alignment:
| Q |
15 |
gctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggtt |
77 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
11696167 |
gctgattcttttcttggacgctaccgcacaatcatgcttgcttctctcatctatatattggtt |
11696229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 11701964 - 11702031
Alignment:
| Q |
15 |
gctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttc |
82 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
11701964 |
gctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagttc |
11702031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 11779146 - 11779227
Alignment:
| Q |
15 |
gctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttcaattcttcactttt |
96 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||| |||||| | |||||| |||| |||||||||||| |
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| T |
11779146 |
gctgattcttttcttggacgctatcacacaatcatacttgcttctcttatctatgtattggttggttctgttcttcactttt |
11779227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 11676071 - 11676132
Alignment:
| Q |
15 |
gctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggt |
76 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |
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| T |
11676071 |
gctgattcttttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggt |
11676132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 11684350 - 11684411
Alignment:
| Q |
15 |
gctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggt |
76 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |
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| T |
11684350 |
gctgattcttttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggt |
11684411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 16609 - 16690
Alignment:
| Q |
15 |
gctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttcaattcttcactttt |
96 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||| |||| |||||||||||| |
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| T |
16609 |
gctgattcttttcttggacgctatcacacaatcatacttgcttctcttatctatatattggttggttctgttcttcactttt |
16690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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