View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_14 (Length: 457)
Name: NF18482_low_14
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_14 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Complemental strand, 43396507 - 43396079
Alignment:
| Q |
13 |
aatatgacagaatatcttcctgatttgtttgcggagttttctcatgtaccaaagagatcttcaccgtagaattcaggtttaccgattgttgcactttcga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396507 |
aatatgacagaatatcttcctgatttgtttgcggagttttctcatgtaccaaagagatattcaccgtagaattcaggtttaccgattgttgcactttcga |
43396408 |
T |
|
| Q |
113 |
ctttcgatacctgaaccgtacacaaacttgcatatcttgttgcagactccatctctttaggtgaaaaaa-ccctcgcaagatcatagattgggatcttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43396407 |
ctttcgatacctgaaccgtacacaaacttgcatatcttgttgcagactccgtctctttaggtgaaaaaaaccctcgcaagatcatagattgggatcttat |
43396308 |
T |
|
| Q |
212 |
tcgtctctttgtttgtgtcaaaaagcttgttgtatggacaaattccaaccttgtggccatatcttttccacaaccaaaacacataacatgtaatccttca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396307 |
tcgtctctttgtttgtgtcaaaaagcttgttgtatggacaaattccaaccttgtggccatatcttttccacaaccaaaacacataacatgtaatccttca |
43396208 |
T |
|
| Q |
312 |
tattcaagattaagaacaagacttaaatcactcatagtgaactttggaatgagtttcttgtcaagatctattttcacacaaatacgagccagtcgatcac |
411 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43396207 |
tattcaagattaagaacaaaacttaaatcactcatagtgaattttggaatgagtttcttgtcaatatctattttcacacaaatacgagccagtcgatcac |
43396108 |
T |
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| Q |
412 |
gagattgactagaagtcaagtggtctact |
440 |
Q |
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| T |
43396107 |
gagattgactagaagtcaagtggtctact |
43396079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 436
Target Start/End: Complemental strand, 40775330 - 40775193
Alignment:
| Q |
299 |
atgtaatccttcatattcaagattaagaacaagacttaaatcactcatagtgaactttggaatgagtttcttgtcaagatctattttcacacaaatacga |
398 |
Q |
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| T |
40775330 |
atgtaatccttcatgttcaatagtaaaaacaaaacctaaaacattcacaatgaactttaaaatgattttcttatcaagatcccttttcacacaaatacgt |
40775231 |
T |
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| Q |
399 |
gccagtcgatcacgagattgactagaagtcaagtggtc |
436 |
Q |
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| T |
40775230 |
gcaaatcgaccacgaaattgactagatgtcaagtggtc |
40775193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 32155786 - 32155923
Alignment:
| Q |
234 |
aagcttgttgtatggacaaattccaaccttgtggccatatcttttccacaaccaaaacacataacatgtaatccttcatattcaagattaagaacaagac |
333 |
Q |
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| T |
32155786 |
aagcttgttatcttgacaaattccaacttggtggccatat--ttcccacaactaaaacacacaacatgtaatccttctttttcaagattaagtacaagac |
32155883 |
T |
|
| Q |
334 |
ttaaatcactcatagtgaactttggaatgagtttcttgtc |
373 |
Q |
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|||| ||| |||||||||||| |||||||||||||||| |
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| T |
32155884 |
ctaaaatacttatagtgaactttagaatgagtttcttgtc |
32155923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 397
Target Start/End: Original strand, 41304605 - 41304771
Alignment:
| Q |
229 |
tcaaaaagcttgttgtatggacaaattccaaccttgtggccatatcttttccacaaccaaaacacataacatgtaatccttcatattcaagattaagaac |
328 |
Q |
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| T |
41304605 |
tcaaaaagattgttgtccggataaattccaattttgtggccatat--ttcccataactaaaacacacaacatgtaatccttcatattcaaaattaagaac |
41304702 |
T |
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| Q |
329 |
aagacttaaatcactcatagtgaactttggaatgagtttcttgtcaagatctattttcacacaaatacg |
397 |
Q |
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| T |
41304703 |
acgatctaaagcacccgcaatgaattttaaaatgagtttcttgtccaaatatatttccacacaagtacg |
41304771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 53666339 - 53666285
Alignment:
| Q |
22 |
gaatatcttcctgatttgtttgcggagttttctcatgtaccaaagagatcttcac |
76 |
Q |
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| T |
53666339 |
gaatatcttcctgatttgtatgcggaattttctcatgaaccaaagggatcttcac |
53666285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 397
Target Start/End: Complemental strand, 20402079 - 20401996
Alignment:
| Q |
313 |
attcaagattaagaacaagacttaaatcactcatagtgaactttggaatgagtttcttgtcaagatctattttcacacaaatacg |
397 |
Q |
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| T |
20402079 |
attcatgattaagaaaaaaacttaaagcactcaaa-tgaactttgaaatgagtttcttgtacaaatctatttccgcataaatacg |
20401996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 48984264 - 48984207
Alignment:
| Q |
275 |
ttttccacaaccaaaacacataacatgtaatccttcatattcaagattaagaacaaga |
332 |
Q |
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| T |
48984264 |
ttttccacaactaaaacatacaacatgtaattcttcatattcaagattaagaacaaga |
48984207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 31023157 - 31023120
Alignment:
| Q |
296 |
aacatgtaatccttcatattcaagattaagaacaagac |
333 |
Q |
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| T |
31023157 |
aacatgtaatccttaatattcaagattaaaaacaagac |
31023120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 436
Target Start/End: Original strand, 2025 - 2096
Alignment:
| Q |
365 |
tttcttgtcaagatctattttcacacaaatacgagccagtcgatcacgagattgactagaagtcaagtggtc |
436 |
Q |
| |
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|||||| |||||||| |||||||||||||||| || | |||| ||||| |||||||||| ||||||||||| |
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| T |
2025 |
tttcttatcaagatcccttttcacacaaatacgtgcaaatcgaccacgaaattgactagatgtcaagtggtc |
2096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 384
Target Start/End: Complemental strand, 26164181 - 26164050
Alignment:
| Q |
246 |
tggacaaattccaaccttgtggccatatcttttccacaaccaaaacacataacatgtaatccttcatattcaagattaagaacaagacttaaatcactca |
345 |
Q |
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| T |
26164181 |
tggacaaatttcagccttgtggtcatat--tttccacaactaaaacacacaacatgtaat-----atattcaagactaagaacaagatctaaagcaagca |
26164089 |
T |
|
| Q |
346 |
tagtgaactttggaatgagtttcttgtcaagatctattt |
384 |
Q |
| |
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| | |||||| || |||||||||||||| |||||||| |
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| T |
26164088 |
cattaaactttagagcgagtttcttgtcaacatctattt |
26164050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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