View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18482_low_16 (Length: 453)
Name: NF18482_low_16
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 45540152 - 45540468
Alignment:
| Q |
17 |
acagcttaccataatttccatcggaatcttcaaaccttgttcacttgacgttgttagccgatggaagttaaaggtgacaacaaagtcaatattgatttac |
116 |
Q |
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| T |
45540152 |
acagcttaccataatttccatcggaatcttcaaaccttgttcacttgacgttgttagccgatggaagttaaaggtgacaacaaagtcaatattgatttac |
45540251 |
T |
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| Q |
117 |
gaactggtcatgctacaaatgcttatcaaccaccacctccgttaacagaacaagagcttgggagagcatctaacaatcctttggaagctcattctcatat |
216 |
Q |
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| T |
45540252 |
gaactggtcatgccacaaatgcttatcaaccaccacctccgttaacagaacaagagcttgggagagcatctaacaatcctttggaagctcattctcatat |
45540351 |
T |
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| Q |
217 |
accagacatcaaccaagcctccgtgacatcattgtcgtcatcgttccaaaatccattcctaggaccaagtgaggcaaccaacgacactgttgaggatgac |
316 |
Q |
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| T |
45540352 |
accagacatcaaccaagcccccgtgacatcattgtcgtcatcgttccaaaatccattcataggaccaagtgaggcaaccaacgacactgttgaggatgac |
45540451 |
T |
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| Q |
317 |
acaaacattggtagttc |
333 |
Q |
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| T |
45540452 |
acaaacattggtagttc |
45540468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 331 - 444
Target Start/End: Original strand, 45540505 - 45540618
Alignment:
| Q |
331 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagagagttcattcaatgagaaaacaaatacaaataacagt |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45540505 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagaaagttcattcaatgagaaaacaaatacaaataacagt |
45540604 |
T |
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| Q |
431 |
gactctgatgatgt |
444 |
Q |
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| T |
45540605 |
gactccgatgatgt |
45540618 |
T |
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