View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18482_low_20 (Length: 370)
Name: NF18482_low_20
Description: NF18482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18482_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 34561501 - 34561293
Alignment:
| Q |
1 |
aacatctgaagtgacacaaagaacaaaacgatccacatttgagatagaagttccagaacaagatgatgatgccataattttccccagaaactgatnnnnn |
100 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34561501 |
aacatctggagtgacacatagaacaaaacgatccacatttgagatagaagttccagaacaagatgatgatgccataattttccccagaaactgat-agaa |
34561403 |
T |
|
| Q |
101 |
nntcaacggcttcaaattcttatggcacttgttttttccaaacagacttgttttttccaaacagaaacaaacaagtcaatcaatataattattattttta |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34561402 |
aatcaacggcttcaaatttttatggcacttgttttttcc-------------------aaacagaaacaaacaaatcaatcaatataattattattttta |
34561322 |
T |
|
| Q |
201 |
aatatagtcacaacaaacataaaataatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34561321 |
aatatagtcacaacaaacataaaataatt |
34561293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 34561220 - 34561163
Alignment:
| Q |
296 |
tcatccgattttgaataaataataaatgataattaatacatcttttagtagcagtaac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34561220 |
tcatccgattttgaataaataataaatgataattaatacatcttttagtagcagtaac |
34561163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University